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JAL-2348 row renderer interface
[jalview.git]
/
src
/
jalview
/
2016-11-02
kiramt
JAL-2282 URLLink unit tests updated
tree
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commitdiff
2016-11-01
Jim Procter
JAL-1738 JAL-345 fix broken calculation of newly marked...
tree
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commitdiff
2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 typo in javadoc
tree
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commitdiff
2016-11-01
gmungoc
JAL-98 simplified repeat() method
tree
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commitdiff
2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactor SequenceAnnotationReport to use refac...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Changed DB accession id token to $DB_ACCESSION...
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Refactored URL link creation into UrlLink
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Removed unexpected ; from code
tree
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commitdiff
2016-11-01
kiramt
JAL-2282 Force double-clicking to use sequence_id cases...
tree
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commitdiff
2016-10-31
gmungoc
JAL-98 round when formatting dec places
tree
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commitdiff
2016-10-31
gmungoc
JAL-1723 ellipsis in tooltip if xrefs to more than...
tree
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commitdiff
2016-10-31
gmungoc
Merge branch 'develop' into features/JAL-1723_sequenceR...
tree
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commitdiff
2016-10-31
kiramt
Force double-clicking to use sequence_id cases and...
tree
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commitdiff
2016-10-31
kiramt
Use ACCESSION_ID for database accession id, and SEQUENC...
tree
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commitdiff
2016-10-30
Jim Procter
JAL-1738 JAL-345 new controller method based on mark...
tree
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commitdiff
2016-10-30
Jim Procter
JAL-345 JAL-1738 SearchResultI method to mark columns...
tree
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commitdiff
2016-10-30
Jim Procter
JAL-966 clarify javadoc for SearchResultsI.getResults
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
tree
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commitdiff
2016-10-27
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2280 Improvement to enable drag'n'drop association...
tree
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commitdiff
2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
tree
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commitdiff
2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
tree
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commitdiff
2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
tree
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commitdiff
2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
tree
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commitdiff
2016-10-26
gmungoc
JAL-2286 modal residue check + commenting
tree
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commitdiff
2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
tree
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commitdiff
2016-10-26
gmungoc
JAL-2286 javadoc, refactor, unit tests for threshold...
tree
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commitdiff
2016-10-26
tcofoegbu
Merge branch 'features/JAL-2284_export-biojsmsa-via...
tree
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commitdiff
2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
tree
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commitdiff
2016-10-25
gmungoc
JAL-2286 use constant for fixed colours
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc corrected
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc added
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 minor fixes to / tests for annotation derivation
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-25
tcofoegbu
Merge branch 'bug/JAL-2277_html-output-wrapped-mode...
tree
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commitdiff
2016-10-25
tcofoegbu
JAL-2277 Improvement to support html+svg export in...
bug/JAL-2277_html-output-wrapped-mode
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 field comments updated
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 small efficiency fix + commenting
tree
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commitdiff
2016-10-25
gmungoc
JAL-98 javadoc / comments updated
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 fixme comment removed - nothing to do
tree
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commitdiff
2016-10-24
gmungoc
JAL-98 ResidueCount 100% test coverage (and bug fixes!)
tree
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commitdiff
2016-10-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-10-24
kiramt
Unit tests for UrlLink
bug/JAL-2281JAL-2282
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'bug/JAL-2272cmdClickGroupEdit' into develop
tree
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commitdiff
2016-10-24
gmungoc
JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl...
bug/JAL-2272cmdClickGroupEdit
tree
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commitdiff
2016-10-24
kiramt
Fixed dialog box messages in English and Spanish. Adjus...
tree
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commitdiff
2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-24
kiramt
Correct Preferences to check for SEQUENCE_NAME as well...
tree
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commitdiff
2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
tree
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commitdiff
2016-10-24
kiramt
Code tidy up. Unit test passes.
tree
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commitdiff
2016-10-22
kiramt
Working links menu
tree
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commitdiff
2016-10-21
kiramt
Factored URL Link constants out into UrlConstants file.
tree
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commitdiff
2016-10-17
kiramt
Merge remote-tracking branch 'origin/bug/JAL-1552dragnd...
tree
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commitdiff
2016-10-17
kiramt
acceptDrop call added before getTransferable in alignme...
bug/JAL-1552dragndroptake2
tree
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commitdiff
2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
tree
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commitdiff
2016-10-17
kiramt
Re-attempt to fix JAL-1552 by removing extra calls...
tree
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commitdiff
2016-10-14
gmungoc
Merge branch 'releases/Release_2_10_Branch' into task...
task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-13
gmungoc
JAL-2253 2 second timeout on ping URL, default 5 minute...
feature/JAL-2553ensemblGenomes
tree
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commitdiff
2016-10-13
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-13
gmungoc
JAL-1479 revise warning message to suit all contexts
bug/JAL-2044jmolModelBinding
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 increase Jmol file load timeout from 5 to...
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 include model name in progress bar message...
tree
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commitdiff
2016-10-11
tcofoegbu
Merge branch 'features/JAL-2039_Offer_cached_structuref...
tree
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commitdiff
2016-10-11
tcofoegbu
JAL-2039 improvement to offer cached structure view...
features/JAL-2039_Offer_cached_structurefiles_immediately
tree
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commitdiff
2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-11
gmungoc
JAL-2241 check for null jprovider when processing New...
tree
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commitdiff
2016-10-11
kiramt
JAL-1552 added acceptDrop call before getTransferable...
bug/JAL-1552dragndropurl
tree
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commitdiff
2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-11
gmungoc
JAL-1479 small tidy of error message when Sifts mapping...
tree
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commitdiff
2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
tree
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
tree
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commitdiff
2016-10-06
gmungoc
JAL-2254 map error text in root node of EMBL XML response
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
gmungoc
JAL-2245 checks for null added (in case EMBL fetch...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2036 rebuild menus for each panel before adding...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 license header
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-05
Jim Procter
Revert "JAL-2245 Castor mapping and code changes for...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 revert to using SequenceOntologyLite due to...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 configure full SO for desktop, SOLite for...
tree
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commitdiff
2016-10-05
gmungoc
JAL-2245 defence against NullPointer if no EMBL data...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 use full SO in desktop application
tree
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commitdiff
2016-10-05
gmungoc
JAL-2105 update Ensembl REST version to 4.7
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 refined warning message
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 added mRNA isA transcript to SequenceOntologyL...
tree
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commitdiff
2016-10-04
gmungoc
Merge branch 'bug/JAL-2245enaXmlChange' into develop
tree
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commitdiff
2016-10-04
gmungoc
JAL-2245 Castor mapping and code changes for change...
bug/JAL-2245enaXmlChange
tree
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commitdiff
2016-10-04
gmungoc
JAL-2232 JAL-2154 update dbrefs to newly created datase...
tree
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commitdiff
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