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Remove variables not used
[jalview.git]
/
src
/
2006-08-10
amwaterhouse
Check selection size before making tree
tree
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commitdiff
2006-08-10
amwaterhouse
group.getSize should be ab.alignment.getGroups
tree
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commitdiff
2006-08-10
amwaterhouse
Check alAndColSel are not null
tree
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commitdiff
2006-08-10
amwaterhouse
Control and shift for col selection
tree
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commitdiff
2006-08-10
amwaterhouse
Reset button added
tree
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commitdiff
2006-08-10
amwaterhouse
Right mouse works with cursor mode
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commitdiff
2006-08-10
amwaterhouse
Only add 1 feature settings table
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commitdiff
2006-08-10
amwaterhouse
Comment out start and end refs
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commitdiff
2006-08-10
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-10
amwaterhouse
file: is a URL
tree
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commitdiff
2006-08-10
amwaterhouse
Invert column selection
tree
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commitdiff
2006-08-09
jprocter
new SequenceI method for making a sub sequence from...
tree
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commitdiff
2006-08-09
jprocter
alignment from seqCigars will correctly mark deleted...
tree
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commitdiff
2006-08-09
jprocter
refactored hidden regions methods and made an Alignment...
tree
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commitdiff
2006-08-09
jprocter
fixed multiple shifts bug.
tree
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commitdiff
2006-08-09
amwaterhouse
Must save all the feature settings
tree
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commitdiff
2006-08-09
amwaterhouse
Check if groups have already been added or not
tree
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commitdiff
2006-08-09
amwaterhouse
Fix for local sources with no capabilities
tree
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commitdiff
2006-08-09
amwaterhouse
Icon drawing updated
tree
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commitdiff
2006-08-09
amwaterhouse
Null hidden cols check
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commitdiff
2006-08-09
amwaterhouse
No need to re repaint
tree
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commitdiff
2006-08-09
amwaterhouse
Height and info message
tree
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commitdiff
2006-08-09
amwaterhouse
Transparency
tree
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commitdiff
2006-08-09
amwaterhouse
Endres check for wrap alignment
tree
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commitdiff
2006-08-09
amwaterhouse
Set the start res and start seq
tree
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commitdiff
2006-08-09
amwaterhouse
Copy hidden cols to new alignment
tree
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commitdiff
2006-08-09
amwaterhouse
Remove system.out
tree
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commitdiff
2006-08-09
amwaterhouse
Make sure link menu is displayed
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commitdiff
2006-08-09
amwaterhouse
Save links and scores and keyValues for features
tree
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commitdiff
2006-08-09
amwaterhouse
KeyValue pairs for features
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commitdiff
2006-08-08
amwaterhouse
Input Data...
tree
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commitdiff
2006-08-08
amwaterhouse
Capitals
tree
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commitdiff
2006-08-08
amwaterhouse
Out by 1 error on show columns
tree
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commitdiff
2006-08-08
amwaterhouse
Applet has hidden regions
tree
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commitdiff
2006-08-08
jprocter
removed extraneous classes.
tree
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commitdiff
2006-08-08
jprocter
locally modified biojava-dasobert package is now org...
tree
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commitdiff
2006-08-07
amwaterhouse
Use idCanvas highlight system
tree
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commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-07
amwaterhouse
Use idCanvas highlight system
tree
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commitdiff
2006-08-07
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-08-07
amwaterhouse
Set wrapped mode even if false
tree
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commitdiff
2006-08-07
amwaterhouse
catch out of memory error for consensus when loading...
tree
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commitdiff
2006-08-07
jprocter
added commented out seqStrings comment.
tree
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commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
tree
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commitdiff
2006-07-28
amwaterhouse
Show reveal all menu
tree
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commitdiff
2006-07-28
amwaterhouse
findSeq in SeqPanel is used
tree
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commitdiff
2006-07-28
amwaterhouse
Resize image if id width changes
tree
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commitdiff
2006-07-28
amwaterhouse
No need for count
tree
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commitdiff
2006-07-28
amwaterhouse
Resize inactive when mouse exited and no dragEvent
tree
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commitdiff
2006-07-28
amwaterhouse
getIndex replaced with findSeq in seqPanel
tree
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commitdiff
2006-07-28
amwaterhouse
Remove system.out
tree
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commitdiff
2006-07-28
amwaterhouse
Scrolling fixed and selection in wrapped mode updated
tree
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commitdiff
2006-07-28
amwaterhouse
getIndex replaced by findSeq in Seqpanel
tree
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commitdiff
2006-07-28
amwaterhouse
Out by one error on reveal columns
tree
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commitdiff
2006-07-28
amwaterhouse
Check height of featurePanel, not this for mousepresses
tree
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commitdiff
2006-07-28
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-07-28
amwaterhouse
Applet doesnt have hidden columns
tree
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commitdiff
2006-07-28
amwaterhouse
Dont set all feature descriptions on status bar
tree
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commitdiff
2006-07-28
amwaterhouse
Dont draw all the panel if just a mouse movement
tree
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commitdiff
2006-07-28
amwaterhouse
If colour hasnt been created, make a new one
tree
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commitdiff
2006-07-28
amwaterhouse
Add transparency
tree
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commitdiff
2006-07-28
amwaterhouse
output source in gff file
tree
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commitdiff
2006-07-27
amwaterhouse
Send gapChar to print original Data
tree
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commitdiff
2006-07-27
amwaterhouse
Remove immediate call to repaint when deleting
tree
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commitdiff
2006-07-27
amwaterhouse
seq size cant be less than 2 for tree
tree
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commitdiff
2006-07-27
amwaterhouse
Sends gapChar to seqData
tree
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commitdiff
2006-07-27
amwaterhouse
remove unnecessary constructor
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commitdiff
2006-07-27
amwaterhouse
Remove unnecessary imports
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commitdiff
2006-07-27
amwaterhouse
Reset das_registry_url if null or empty
tree
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commitdiff
2006-07-27
amwaterhouse
Dont set pdb file if it doenst exist
tree
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commitdiff
2006-07-27
amwaterhouse
NOR the <pre> tabs
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commitdiff
2006-07-27
amwaterhouse
Use DBRefSource.PDB
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commitdiff
2006-07-27
amwaterhouse
Save PDB file to disk
tree
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commitdiff
2006-07-27
amwaterhouse
Readline instead of bit by bit
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commitdiff
2006-07-27
amwaterhouse
Cant have col less than 0
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commitdiff
2006-07-27
amwaterhouse
Readded
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commitdiff
2006-07-26
amwaterhouse
PDB file MUST have an id
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commitdiff
2006-07-26
amwaterhouse
Load and save PDB files
tree
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commitdiff
2006-07-26
amwaterhouse
Add file ref for pdb files
tree
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commitdiff
2006-07-26
jprocter
Ignore list created
tree
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commitdiff
2006-07-26
jprocter
Cigars for representing alignment view as used for...
tree
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commitdiff
2006-07-26
jprocter
CigarBase class and derivatives.
tree
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commitdiff
2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
tree
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commitdiff
2006-07-26
amwaterhouse
Switch to new srs url
tree
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commitdiff
2006-07-26
amwaterhouse
seqs[j] replaces current
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commitdiff
2006-07-26
amwaterhouse
moved to org.biojava
tree
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commitdiff
2006-07-26
amwaterhouse
back to org.biojava
tree
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commitdiff
2006-07-26
amwaterhouse
Back to org.biojava
tree
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commitdiff
2006-07-26
amwaterhouse
Column hide/show updated
tree
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commitdiff
2006-07-26
amwaterhouse
Calculate overlap hidden regions
tree
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commitdiff
2006-07-26
amwaterhouse
Remove left, right, empty cols work on hidden reps
tree
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commitdiff
2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
tree
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commitdiff
2006-07-25
amwaterhouse
activeRow is -1
tree
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commitdiff
2006-07-25
amwaterhouse
Odd edit bug with represented seqs fixed
tree
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commitdiff
2006-07-25
amwaterhouse
Dont add pdb format here
tree
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commitdiff
2006-07-25
amwaterhouse
1.1 compatible
tree
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commitdiff
2006-07-25
amwaterhouse
Moved to datamodel
tree
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commitdiff
2006-07-25
amwaterhouse
Output menus added
tree
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commitdiff
2006-07-25
amwaterhouse
Repaint
tree
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commitdiff
2006-07-25
amwaterhouse
Dont make new image unless resize
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commitdiff
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