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JAL-1667 JAL-1668 JAL-1553 help docs update
[jalview.git]
/
src
/
2015-07-21
tcofoegbu
Merge
tree
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commitdiff
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
tree
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commitdiff
2015-07-21
Jim Procter
Merge branch 'ismb/2015_demo' into develop
tree
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commitdiff
2015-07-16
Jim Procter
revision for JAL-1749 - ensure view 2D structure menu...
tree
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commitdiff
2015-07-15
gmungoc
JAL-1813 only pair up A-Z with a-z if annotation is RNA
tree
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commitdiff
2015-07-13
tcofoegbu
JAL-1788 added help documentation for biojson
tree
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commitdiff
2015-07-09
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-07-09
tcofoegbu
JAL-1806 bug fix to loop through the entire data file...
tree
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commitdiff
2015-07-09
tcofoegbu
JAL-1769 added test for commandline input operations
tree
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commitdiff
2015-07-08
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-07-08
gmungoc
JAL-1598 replaced faulty regex, amended Varna call...
tree
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commitdiff
2015-07-07
tcofoegbu
JAL-1769 fixed output to jalview (.jpv) file in headles...
tree
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commitdiff
2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
tree
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commitdiff
2015-07-06
tcofoegbu
Merge branch 'features/1769_headless-mode-test' into...
tree
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commitdiff
2015-07-06
tcofoegbu
JAL-1769 fixed headless execution mode and created...
tree
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commitdiff
2015-07-06
gmungoc
JAL-1421 generics used for leaner safer code
tree
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commitdiff
2015-07-06
gmungoc
JAL-1799 tweaked calculation for applet, now showing...
tree
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commitdiff
2015-07-06
gmungoc
JAL-1799 equivalent logic in applet
tree
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commitdiff
2015-07-03
gmungoc
Merge branch 'develop' into features/JAL-892varnaToProject
tree
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commitdiff
2015-07-03
gmungoc
JAL-892 1 second delay for correct initial rendering...
tree
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commitdiff
2015-07-02
tcofoegbu
Merge branch 'bug/JAL-1443_loading-empty-file' into...
tree
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commitdiff
2015-07-02
tcofoegbu
JAL-1443 data validation for empty content before loadi...
tree
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commitdiff
2015-07-02
gmungoc
JAL-1677 check all response lines when parsing REST...
tree
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commitdiff
2015-07-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-07-01
gmungoc
JAL-1681 more condensed tooltip where codons share...
tree
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commitdiff
2015-07-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-07-01
tcofoegbu
house keeping
tree
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commitdiff
2015-07-01
gmungoc
JAL-1802 explanatory comment added
tree
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commitdiff
2015-07-01
gmungoc
JAL-1802 handle slide sequences edits in split frame...
tree
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commitdiff
2015-07-01
gmungoc
JAL-1799 deduct more space for decorators on Windows
tree
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commitdiff
2015-07-01
gmungoc
JAL-1619 align the added sequences to match what they...
tree
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commitdiff
2015-06-30
tcofoegbu
Merge branch 'features/JAL-1641_JSON-tests-and-docs...
tree
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commitdiff
2015-06-30
tcofoegbu
JAL-1641 round trip test/refactoring
tree
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commitdiff
2015-06-30
gmungoc
JAL-1691 trackpad scrolling goes to full width even...
tree
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commitdiff
2015-06-29
gmungoc
JAL-1799 adjusted annotation height calculation
tree
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commitdiff
2015-06-26
tcofoegbu
JAL-1641 fixed broken functionalities after refactor
tree
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commitdiff
2015-06-26
gmungoc
Merge branch 'develop' into features/JAL-892varnaToProject
tree
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commitdiff
2015-06-26
tcofoegbu
merge
tree
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commitdiff
2015-06-26
tcofoegbu
JAL-1780 improvement to ensure export settings dialog...
tree
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commitdiff
2015-06-25
Jim Procter
JAL-1691 avoid NPE when original split frame has been...
tree
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commitdiff
2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
tree
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commitdiff
2015-06-24
Jim Procter
Merge branch 'features/JAL-1370_patchshowunconserved...
tree
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commitdiff
2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
tree
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commitdiff
2015-06-23
Jim Procter
JAL-1780 JAL-653 jim forgot to put the conditional...
merge/develop_JAL-1780_JAL-653_JAL-1892
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commitdiff
2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
tree
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commitdiff
2015-06-22
Jim Procter
JAL-653 JAL-1780 dropped unnecessary refs
tree
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commitdiff
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
tree
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commitdiff
2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
tree
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commitdiff
2015-06-22
gmungoc
JAL-892 tidy Varna panel names; JAL-1789 simplified...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
tree
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commitdiff
2015-06-19
gmungoc
JAL-892 check viewer is linked to alignment panel on...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-653 JAL-1780 minimise call rate now av.hasHiddenRow...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
tree
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commitdiff
2015-06-19
tcofoegbu
JAL-1270 JUnit to TestNG refactoring
tree
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commitdiff
2015-06-18
Jim Procter
JAL-653 JAL-1780 JAL-1543 javadoc and comment about...
tree
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commitdiff
2015-06-18
Jim Procter
JAL-653 JAL-1780 javadoc for FeatureRenderer prior...
tree
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commitdiff
2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
tree
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commitdiff
2015-06-18
gmungoc
JAL-1544 typos in comments
tree
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commitdiff
2015-06-18
gmungoc
JAL-892 JAL-1779 save/restore Varna viewer to/from...
tree
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commitdiff
2015-06-18
gmungoc
JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
tree
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commitdiff
2015-06-18
gmungoc
JAL-892 schema changes (rnaViewer) for save Varna to...
tree
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commitdiff
2015-06-18
gmungoc
JAL-1781 annotation.sequenceRef now sequence id not...
features/JAL-1781annotationXmlIds
tree
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commitdiff
2015-06-17
Jim Procter
JAL-1784 minimise data duplication, and report out...
tree
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commitdiff
2015-06-17
Jim Procter
JAL-1784 refactor parse method to directly parse FilePa...
tree
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commitdiff
2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
tree
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commitdiff
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
tree
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commitdiff
2015-06-17
tcofoegbu
JAL-1780 more support for export setting for flatfile...
features/JAL-1780_export-settings_flatfile
tree
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commitdiff
2015-06-17
tcofoegbu
JAL-1780 Export settings for flatfile output
tree
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commitdiff
2015-06-17
gmungoc
JAL-1588 restore ChimeraViewFrame geometry as well
tree
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commitdiff
2015-06-17
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-06-17
gmungoc
JAL-1778 reinstated this.ssm to handle 'close all windo...
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
tree
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commitdiff
2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
tree
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commitdiff
2015-06-15
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-06-15
gmungoc
JAL-1778 deregister as a listener when panel closed
tree
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commitdiff
2015-06-15
tcofoegbu
JAL-1641 clean up
tree
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commitdiff
2015-06-15
tcofoegbu
JAL-1641 docs for ComplexAlignFile interface
tree
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commitdiff
2015-06-15
tcofoegbu
clean up
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commitdiff
2015-06-12
tcofoegbu
JAL-1627 removed extra spaces at end of tooltip
tree
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
tree
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commitdiff
2015-06-10
tcofoegbu
updated build.xml
tree
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commitdiff
2015-06-10
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-06-10
gmungoc
Merge remote-tracking branch
tree
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commitdiff
2015-06-10
tcofoegbu
JAL-1641 updated applet version
tree
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commitdiff
2015-06-10
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-06-10
gmungoc
JAL-1764 save Chimera/Jmol state as separate entries...
tree
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commitdiff
2015-06-10
Jim Procter
JAL-1764 add structure view type attribute to project...
schema/JAL-1764_structureViewAttribute
tree
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commitdiff
2015-06-09
tcofoegbu
merge commit
tree
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commitdiff
2015-06-09
tcofoegbu
JAL-1488 bug-fix for incorrect start/end position in...
tree
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commitdiff
2015-06-08
gmungoc
JAl-1421 fix method reflection argument (properly this...
tree
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commitdiff
2015-06-08
gmungoc
JAL-1421 undid premature 'improvement' of method parame...
tree
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commitdiff
2015-06-07
Jim Procter
JAL-429 remove pointless code from phylip parser
features/JAL-653_rebased_gffalignments
tree
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commitdiff
2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
tree
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commitdiff
2015-06-07
Jim Procter
JAL-653 basic GFF3 alignment import wrapper class
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commitdiff
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