re-enabled new uniprot sequence fetcher on spike branch
[jalview.git] / src /
2016-04-27 tcofoegbure-enabled new uniprot sequence fetcher on spike branch
2016-04-26 tcofoegbumerge
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable...
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right...
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling...
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
2016-04-26 tcofoegbumerge
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS...
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 changed extension for data column config files
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 resolved fts data column config file path...
2016-04-26 tcofoegbuJAL-2071 House keeping
2016-04-26 tcofoegbuJAL-2071 improvement to reduce webservice requests...
2016-04-25 tcofoegbudevelop merge
2016-04-25 tcofoegbudevelop merge
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search
2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open...
2016-04-24 Jim ProcterJAL-1551 JAL-2077 formatting
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop
2016-04-24 Jim ProcterJAL-2075 make GroovyConsole a singleton so tests requir...
2016-04-23 Jim ProcterJAL-2075 fix: use AlignmentView.getVisibleContigs and...
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test)
2016-04-23 Jim ProcterJAL-2075 formatting
2016-04-22 tcofoegbuJAL-1563 JAL-2071 Update and completed implementation...
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house...
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable...
2016-04-22 gmungocJAL-2068 Javadoc added
2016-04-22 gmungocJAL-2068 redundant implements clauses removed
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score...
2016-04-20 Jim Procterfix for JAL-2072
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free...
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib...
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur...
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method...
2016-04-14 gmungocJAL-2049 small refactor of constructors to avoid code...
2016-04-14 gmungocJAL-1421 type parameter added to some collections
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-14 gmungocJAL-1270 JAL-653 use 'parse immediately' FeaturesFile...
2016-04-13 Jim ProcterJAL-2046 fix: patched SeqsetUtils so sequence features...
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken...
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test
2016-04-13 tcofoegbumerge
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to...
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove...
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ...
2016-04-11 gmungocJAL-1705 code/comment tidy only
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time
2016-04-11 tcofoegbumerge
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when...
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to...
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display
2016-04-08 Jim ProcterJAL-2053 JAL-1551 javadoc and simpler code
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo...
2016-04-06 tcofoegbumerge
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell...
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement
2016-04-05 Jim ProcterJAL-2046 add/delete SequenceFeature operate on dataset...
2016-04-05 Jim ProcterJAL-2046 setSequenceFeature contract implementation...
2016-04-05 Jim ProcterJAL-2046 explicit contract for get/set SequenceFeatures...
2016-04-05 Jim ProcterJAL-2046 remove javadoc
2016-04-05 Jim ProcterJAL-2046 simpler deriveSequence - promote to dataset...
2016-04-05 Jim ProcterJAL-2046 clarify contract for copy constructor and...
2016-04-05 Jim ProcterJAL-2046 explicitly copy char[] when cloning sequence...
2016-04-05 Jim ProcterJAL-2046 safer createDatasetSequence manipulates privat...
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original...
2016-04-04 Jim ProcterJAL-2001 catch -ve column values
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API
2016-04-04 Jim ProcterJAL-1551 formatting
2016-04-04 Jim ProcterJAL-2001 - note about possible side effect on JalviewLi...
2016-04-04 Jim ProcterJAL-2010 refactoring todo
2016-04-04 Jim ProcterJAL-2001 use fast column selection test
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-04-04 Jim ProcterJAL-2001 faster check for a column being selected
2016-04-04 Jim ProcterJAL-2001 javadoc
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with...
2016-04-04 Jim ProcterJAL-2001 JAL-1722 - store selection as ArrayList and...
2016-04-01 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu...
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align...
2016-04-01 tcofoegbuJAL-2048 Update to structureviz2 package from cytoscape
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1...
2016-04-01 gmungocJAL-1705 include stop codon in mapped CDS range so...
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL...
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms)
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality...
2016-03-31 tcofoegbuJAL-2035 improvement to add binding to multiple model
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check...
2016-03-30 tcofoegbuJAL-2038 bug fix for NPE while setting progress message...
2016-03-28 tcofoegbumerge
2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu...
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks
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