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JAL-1216 switch to official release of VARNA 3.9
[jalview.git] / src /
2012-12-04 jprocterJAL-1216 switch to official release of VARNA 3.9 tree | commitdiff
2012-12-04 jprocterJAL-1214 todo tree | commitdiff
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2012-12-04 jprocterJAL-674 commented out annotate3d calling code for Jmol... tree | commitdiff
2012-12-04 jprocterJAL-1028 JAL-674 hooks to call external processing... tree | commitdiff
2012-12-04 jprocterJAL-1028 tidy and refactor external processing and... tree | commitdiff
2012-11-19 jprocterbugfix tree | commitdiff
2012-11-17 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-17 jprocterFileParse adapter for reading directly from inputstreams tree | commitdiff
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... tree | commitdiff
2012-11-17 jprocterreturn annotated rna sequences from rnaml returned... tree | commitdiff
2012-11-17 jprocterstore chainid on pdbentry tree | commitdiff
2012-11-17 jprocterformat adapter should return AlignmentI tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctercall annotate3d service and parse rnaml to alignment tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctersequence numbering from 1 tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jprocterstore chaincode on pdbentry tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful tree | commitdiff
2012-11-17 jprocteropenjdk7 returns null for default value selected format... tree | commitdiff
2012-11-17 jproctermethod to construct sequence mapping for matching posit... tree | commitdiff
2012-11-17 jprocterconvenience method for performing pairwise alignment tree | commitdiff
2012-11-17 jprocterformatting and javadoc tree | commitdiff
2012-11-15 Paolo Di TommasoFixed T-Coffee file scores parser to support extended... tree | commitdiff
2012-11-15 jprocterdon't set background colour for menu bar tree | commitdiff
2012-11-15 jprocterallow .rnaml as a filename extension tree | commitdiff
2012-11-15 jproctercomment on jalview.io.AlignFile architecture tree | commitdiff
2012-11-15 jproctersource formatting tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-09 jprocterconstructor takes settings from any existing feature... tree | commitdiff
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called... tree | commitdiff
2012-11-08 jprocterremember to close input file! tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to... tree | commitdiff
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for... tree | commitdiff
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin... tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch... tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources... tree | commitdiff
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$... tree | commitdiff
2012-10-04 jprocterJAL-1064 JAL-671 make sure all buttons are disabled... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalvi... tree | commitdiff
2012-10-03 jprocterJAL-1183 JAL-343 - use dialog queue for JABA warning... tree | commitdiff
2012-10-02 jprocterJAL-1185 patch NPE - create new group for subtree on... tree | commitdiff
2012-10-01 jprocterJAL-1130 JAL-1137 messy hardcoding of author list to... tree | commitdiff
2012-10-01 jprocterJAL-1130 JAL-1139 hardcode preferred height to logo... tree | commitdiff
2012-10-01 jprocterJAL-1130 more robust loading code and different logos... tree | commitdiff
2012-10-01 jprocterJAL-1183 dialog thread is only started after the splash... tree | commitdiff
2012-10-01 jprocterJAL-1111 dialog flickers whilst example file starts... tree | commitdiff
2012-10-01 jprocterJAL-1184 apparent deadlock when launching jalview on... tree | commitdiff
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display threa... tree | commitdiff
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt tree | commitdiff
2012-10-01 jprocterJAL-1183 dialog queue tree | commitdiff
2012-09-27 jprocterJAL-1030 patch typo tree | commitdiff
2012-09-27 jprocterJAL-1179 - regression from JAL-1030 patch implicitly... tree | commitdiff
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to... tree | commitdiff
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when... tree | commitdiff
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty... tree | commitdiff
2012-09-25 jprocterJAL-1010 write validated value back to text field to... tree | commitdiff
2012-09-25 jprocterJAL-1173 - trap redraw buffer OOM errors. needs a test... tree | commitdiff
2012-09-25 jprocterJAL-1173 try to catch OOMs when loading annotation... tree | commitdiff
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand... tree | commitdiff
2012-09-24 jprocterformatting tree | commitdiff
2012-09-24 jprocterJAL-958 normalise logo menu options in applet tree | commitdiff
2012-09-24 jprocterJAL-958 enable logo display when normalise option selected tree | commitdiff
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme... tree | commitdiff
2012-09-24 jprocteronly recalc group conservation after last sequence... tree | commitdiff
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme... tree | commitdiff
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated... tree | commitdiff
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to... tree | commitdiff
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global... tree | commitdiff
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed. tree | commitdiff
2012-09-21 jprocterJAL-1165 allow progress indicators on the web service... tree | commitdiff
2012-09-21 jprocterJAL-1130 jalview spinning icon for web service dialog tree | commitdiff
2012-09-21 jprocterJAL-1130 splashscreen logo tree | commitdiff
2012-09-19 jprocterJAL-1130 new logo in help, splash screen and web servic... tree | commitdiff
2012-09-19 jprocterJAL-1130 new logo spinner in webservices status window tree | commitdiff
2012-09-19 jprocterJAL-1130 made SplashScreen able to be a dialog that... tree | commitdiff
2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code... tree | commitdiff
2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen. tree | commitdiff
2012-09-19 jprocterJAL-1170 column and row positions confused in implement... tree | commitdiff
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for... tree | commitdiff
2012-09-06 jprocterJAL-958 store/recover normalised flag tree | commitdiff
2012-09-06 jprocterJAL-958 store normalised flag in jalview project tree | commitdiff
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA... tree | commitdiff
2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode... tree | commitdiff
2012-09-06 jprocterJAL-1167 method and simple tests for printing score... tree | commitdiff
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition tree | commitdiff
2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special... tree | commitdiff
2012-09-05 jprocterformatting tree | commitdiff
2012-09-05 jprocterpatch for NPE when no services are available to resolve... tree | commitdiff
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied... tree | commitdiff
2012-09-05 jprocterJAL-1162 catch security exception and just use bare... tree | commitdiff
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run tree | commitdiff
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