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JAL-3851 remove old interface
[jalview.git] / src /
2021-09-02 Ben SoaresJAL-3851 remove old interface tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 tidy up REMOVEME logging tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 start highlight tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 fix caching and tidy up old methods tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 re-engineering endpoints as separate classes tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 API handling of rest calls tree | commitdiff
2021-09-02 Ben SoaresJAL-3851 convenience methods for logging exceptions tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 tree | commitdiff
2021-06-09 Jim Procterfixes JAL-3840 tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows tree | commitdiff
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... tree | commitdiff
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-03-05 Ben SoaresJAL-3618 Enable appBundleIsTraversable in JFileChooser... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-02-18 gmungocJAL-3822 pass panel height and width to wrapped geometr... tree | commitdiff
2021-02-18 gmungocJAL-2422 remove temporary patch (requires ChimeraX... tree | commitdiff
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... tree | commitdiff
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... tree | commitdiff
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 tree | commitdiff
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... tree | commitdiff
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... tree | commitdiff
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved... tree | commitdiff
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log... tree | commitdiff
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-11-10 Ben SoaresJAL-3676 improvement for visual selection of console... tree | commitdiff
2020-11-10 Ben SoaresJAL-3676 code review -- added non-listed Level into... tree | commitdiff
2020-11-10 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements tree | commitdiff
2020-11-06 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... tree | commitdiff
2020-11-06 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7 tree | commitdiff
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-10-28 Jim Procterfix for JAL-3765 tree | commitdiff
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop tree | commitdiff
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands tree | commitdiff
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... tree | commitdiff
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... tree | commitdiff
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0 tree | commitdiff
2020-08-31 gmungocJAL-1191 use Cache.log for logging tree | commitdiff
2020-08-31 gmungocJAL-1191 reduce logging level for warnings tree | commitdiff
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0 tree | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test tree | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes tree | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop tree | commitdiff
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop tree | commitdiff
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