2017-10-05 |
gmungoc | JAL-2738 update spikes/mungo |
tree | commitdiff |
2017-10-05 |
gmungoc | JAL-2755 transfer chromosomal reference from transcript... |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-09-29 |
kiramt | JAL-2674 finish with iterators for now |
tree | commitdiff |
2017-09-28 |
kiramt | JAL-2647 more iterators |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 JAL-2154 add DBRef from transcript to synthesi... |
tree | commitdiff |
2017-09-12 |
gmungoc | JAL-2727 first pass of test of memory recovery on close all |
tree | commitdiff |
2017-09-04 |
gmungoc | JAL-2617 unit tests for CDS + stop codon, CDS with... bug/JAL-2617mappedStopCodon |
tree | commitdiff |
2017-08-30 |
gmungoc | JAL-2685 tweaks to output spacing, updated TestAlignSeq... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting |
tree | commitdiff |
2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set helix number as feature group in SequenceF... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2403 use preferred factory method to create score... |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 fixme’s removed |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 update assert to correct width for normalising... |
tree | commitdiff |
2017-05-02 |
Jim Procter | JAL-2424 resolved, assert updated to pass (1f != 1d) |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
tree | commitdiff |
2017-04-11 |
gmungoc | JAL-2403 improved ScoreModelI hierarchy as per Kira... |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2403 unit tests for PCA.computeSimilarity, signatur... |
tree | commitdiff |
2017-04-10 |
gmungoc | JAL-2416 test updated for reinstatement of '*' row... |
tree | commitdiff |
2017-03-29 |
gmungoc | JAL-2416 revert to '*' not '-' in score matrix, handle... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2403 further test coverage for ScoreMatrix, min... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 tidy up after switch from ' ' to '-' in score... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 score matrix gap symbol (if any) dynamically... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 add score model description field for tooltip... |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 use '-' not space for gap in score matrices |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-2416 tests added for ScoreMatrix |
tree | commitdiff |
2017-03-23 |
gmungoc | JAL-2393 updated test for removal of PIDDistanceModel |
tree | commitdiff |
2017-02-28 |
gmungoc | JAL-1632 'includeGaps' applied to FeatureDistanceModel... |
tree | commitdiff |
2017-02-27 |
gmungoc | JAL-2416 seqspace.scm and PIDDistanceModel replaced... |
tree | commitdiff |
2017-02-27 |
gmungoc | JAL-838 ScoreMatrix now respects SimilarityParams! |
tree | commitdiff |
2017-02-27 |
gmungoc | JAL-838 tests for PID calculation with parameter options |
tree | commitdiff |
2017-02-24 |
gmungoc | JAL-838 added 'SeqSpace' PID mode, added parameters... |
tree | commitdiff |
2017-02-24 |
gmungoc | JAL-2403 PIDModel added (wip) |
tree | commitdiff |
2017-02-24 |
gmungoc | JAL-1483 PIDModel potential replacement for PIDDistance... |
tree | commitdiff |
2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 typo |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 ScoreMatrix.getMatrix() returns a defensive... |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 support roundtrip print/parse of ScoreMatrix |
tree | commitdiff |
2017-02-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 more validation in ScoreMatrix constructor |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
tree | commitdiff |
2017-02-20 |
gmungoc | JAL-2416 replaced dependency on ResidueProperties with... |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 score models now held in order added |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2403 extract method refactoring of FeatureScoreMode... |
tree | commitdiff |
2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-2416 allow alphabet symbol (optional) in first... |
tree | commitdiff |
2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
2017-01-16 |
gmungoc | JAL-1270 class renamed |
tree | commitdiff |
2017-01-16 |
gmungoc | JAL-1270 tweaks to AlignmentGenerator / client class |
tree | commitdiff |
2017-01-12 |
gmungoc | JAL-1270 renamed AlignmentGenerator, and added peptide... |
tree | commitdiff |
2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-28 |
tcofoegbu | Merge branch 'features/JAL-2326_JOptionPane-refactoring... |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-24 |
tcofoegbu | JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring |
tree | commitdiff |
2016-11-24 |
Jim Procter | JAL-2325 apply license to new source files |
tree | commitdiff |
2016-11-23 |
Jim Procter | Merge branch 'bug/JAL-2323disulfideOverview' into develop |
tree | commitdiff |
2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
tree | commitdiff |
2016-11-21 |
Jim Procter | JAL-2335 failing test for FeatureRendererModel.findFeat... |
tree | commitdiff |
2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
tree | commitdiff |
2016-11-04 |
gmungoc | JAL-966 JAL-1854 removed redundant methods / modifiers... |
tree | commitdiff |
2016-11-04 |
gmungoc | JAL-2302 unit tests added for Finder |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
tree | commitdiff |
2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
tree | commitdiff |
2016-11-01 |
gmungoc | Conservation now using ResidueCount; tests added |
tree | commitdiff |
2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
tree | commitdiff |
2016-10-25 |
gmungoc | JAL-98 minor fixes to / tests for annotation derivation |
tree | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
2016-10-24 |
gmungoc | JAL-98 ResidueCount 100% test coverage (and bug fixes!) |
tree | commitdiff |
2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 apply license |
tree | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 format tests |
tree | commitdiff |
2016-10-04 |
gmungoc | JAL-2232 some fix / partial fix of failing tests bug/JAL-2210_hack_for_Release_2_10 |
tree | commitdiff |
2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 first pass at attempting to fix CrossRef tests... |
tree | commitdiff |
2016-09-27 |
gmungoc | JAL-2230 JAL-2049 added sequence feature transfer to |
tree | commitdiff |
2016-09-21 |
Jim Procter | JAL-2214 test for strict Watson-Crick pairing |
tree | commitdiff |
2016-08-30 |
Jim Procter | Merge branch 'develop' into merge/develop_bug/JAL-2154p... |
tree | commitdiff |
2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
tree | commitdiff |
2016-08-29 |
gmungoc | JAL-1841 robustness fix bug/JAL-1841rnaSecStr |
tree | commitdiff |
2016-08-26 |
Jim Procter | JAL-2154 patch regression on DbRefFetcher due to PDB... |
tree | commitdiff |
2016-08-26 |
gmungoc | Merge branch 'develop' into bug/JAL-1841rnaSecStr |
tree | commitdiff |
2016-08-26 |
gmungoc | JAL-2049 set Ensembl variant source to ENSEMBL if ... |
tree | commitdiff |
2016-08-25 |
Jim Procter | JAL-2106 JAL-2154 fix test for additional reference... |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
tree | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 FIXME for test failure |
tree | commitdiff |
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