| 2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols... |
tree | commitdiff |
| 2017-03-28 |
gmungoc | JAL-2403 further test coverage for ScoreMatrix, min... |
tree | commitdiff |
| 2017-03-27 |
gmungoc | JAL-2416 tidy up after switch from ' ' to '-' in score... |
tree | commitdiff |
| 2017-03-27 |
gmungoc | JAL-2416 score matrix gap symbol (if any) dynamically... |
tree | commitdiff |
| 2017-03-27 |
gmungoc | JAL-2416 add score model description field for tooltip... |
tree | commitdiff |
| 2017-03-27 |
gmungoc | JAL-2416 use '-' not space for gap in score matrices |
tree | commitdiff |
| 2017-03-24 |
gmungoc | JAL-2416 tests added for ScoreMatrix |
tree | commitdiff |
| 2017-03-23 |
gmungoc | JAL-2393 updated test for removal of PIDDistanceModel |
tree | commitdiff |
| 2017-02-28 |
gmungoc | JAL-1632 'includeGaps' applied to FeatureDistanceModel... |
tree | commitdiff |
| 2017-02-27 |
gmungoc | JAL-2416 seqspace.scm and PIDDistanceModel replaced... |
tree | commitdiff |
| 2017-02-27 |
gmungoc | JAL-838 ScoreMatrix now respects SimilarityParams! |
tree | commitdiff |
| 2017-02-27 |
gmungoc | JAL-838 tests for PID calculation with parameter options |
tree | commitdiff |
| 2017-02-24 |
gmungoc | JAL-838 added 'SeqSpace' PID mode, added parameters... |
tree | commitdiff |
| 2017-02-24 |
gmungoc | JAL-2403 PIDModel added (wip) |
tree | commitdiff |
| 2017-02-24 |
gmungoc | JAL-1483 PIDModel potential replacement for PIDDistance... |
tree | commitdiff |
| 2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
tree | commitdiff |
| 2017-02-21 |
gmungoc | JAL-2416 typo |
tree | commitdiff |
| 2017-02-21 |
gmungoc | JAL-2416 ScoreMatrix.getMatrix() returns a defensive... |
tree | commitdiff |
| 2017-02-21 |
gmungoc | JAL-2416 support roundtrip print/parse of ScoreMatrix |
tree | commitdiff |
| 2017-02-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
| 2017-02-21 |
gmungoc | JAL-2416 more validation in ScoreMatrix constructor |
tree | commitdiff |
| 2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
tree | commitdiff |
| 2017-02-20 |
gmungoc | JAL-2416 replaced dependency on ResidueProperties with... |
tree | commitdiff |
| 2017-02-17 |
gmungoc | JAL-2416 score models now held in order added |
tree | commitdiff |
| 2017-02-17 |
gmungoc | JAL-2403 extract method refactoring of FeatureScoreMode... |
tree | commitdiff |
| 2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
| 2017-02-13 |
gmungoc | JAL-2416 allow alphabet symbol (optional) in first... |
tree | commitdiff |
| 2017-02-13 |
gmungoc | JAL-1632 JAL-2416 load score matrices from file, as... |
tree | commitdiff |
| 2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix |
tree | commitdiff |
| 2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA... |
tree | commitdiff |
| 2017-01-16 |
gmungoc | JAL-1270 class renamed |
tree | commitdiff |
| 2017-01-16 |
gmungoc | JAL-1270 tweaks to AlignmentGenerator / client class |
tree | commitdiff |
| 2017-01-12 |
gmungoc | JAL-1270 renamed AlignmentGenerator, and added peptide... |
tree | commitdiff |
| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
| 2016-11-28 |
tcofoegbu | Merge branch 'features/JAL-2326_JOptionPane-refactoring... |
tree | commitdiff |
| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
| 2016-11-24 |
tcofoegbu | JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring |
tree | commitdiff |
| 2016-11-24 |
Jim Procter | JAL-2325 apply license to new source files |
tree | commitdiff |
| 2016-11-23 |
Jim Procter | Merge branch 'bug/JAL-2323disulfideOverview' into develop |
tree | commitdiff |
| 2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
tree | commitdiff |
| 2016-11-21 |
Jim Procter | JAL-2335 failing test for FeatureRendererModel.findFeat... |
tree | commitdiff |
| 2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
tree | commitdiff |
| 2016-11-04 |
gmungoc | JAL-966 JAL-1854 removed redundant methods / modifiers... |
tree | commitdiff |
| 2016-11-04 |
gmungoc | JAL-2302 unit tests added for Finder |
tree | commitdiff |
| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
tree | commitdiff |
| 2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
tree | commitdiff |
| 2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
tree | commitdiff |
| 2016-11-01 |
gmungoc | Conservation now using ResidueCount; tests added |
tree | commitdiff |
| 2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
tree | commitdiff |
| 2016-10-25 |
gmungoc | JAL-98 minor fixes to / tests for annotation derivation |
tree | commitdiff |
| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
| 2016-10-24 |
gmungoc | JAL-98 ResidueCount 100% test coverage (and bug fixes!) |
tree | commitdiff |
| 2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
tree | commitdiff |
| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 apply license |
tree | commitdiff |
| 2016-10-05 |
Jim Procter | JAL-2189 format tests |
tree | commitdiff |
| 2016-10-04 |
gmungoc | JAL-2232 some fix / partial fix of failing tests bug/JAL-2210_hack_for_Release_2_10 |
tree | commitdiff |
| 2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
tree | commitdiff |
| 2016-10-02 |
Jim Procter | JAL-2210 first pass at attempting to fix CrossRef tests... |
tree | commitdiff |
| 2016-09-27 |
gmungoc | JAL-2230 JAL-2049 added sequence feature transfer to |
tree | commitdiff |
| 2016-09-21 |
Jim Procter | JAL-2214 test for strict Watson-Crick pairing |
tree | commitdiff |
| 2016-08-30 |
Jim Procter | Merge branch 'develop' into merge/develop_bug/JAL-2154p... |
tree | commitdiff |
| 2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
tree | commitdiff |
| 2016-08-29 |
gmungoc | JAL-1841 robustness fix bug/JAL-1841rnaSecStr |
tree | commitdiff |
| 2016-08-26 |
Jim Procter | JAL-2154 patch regression on DbRefFetcher due to PDB... |
tree | commitdiff |
| 2016-08-26 |
gmungoc | Merge branch 'develop' into bug/JAL-1841rnaSecStr |
tree | commitdiff |
| 2016-08-26 |
gmungoc | JAL-2049 set Ensembl variant source to ENSEMBL if ... |
tree | commitdiff |
| 2016-08-25 |
Jim Procter | JAL-2106 JAL-2154 fix test for additional reference... |
tree | commitdiff |
| 2016-08-25 |
Jim Procter | Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation |
tree | commitdiff |
| 2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
tree | commitdiff |
| 2016-08-24 |
Jim Procter | JAL-2106 FIXME for test failure |
tree | commitdiff |
| 2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
tree | commitdiff |
| 2016-08-23 |
Jim Procter | JAL-2154 updated testMakeCDSAlignment for expected... |
tree | commitdiff |
| 2016-08-22 |
gmungoc | JAL-2011 adjust method to fix failing unit test |
tree | commitdiff |
| 2016-08-18 |
gmungoc | Merge branch 'develop' into bug/JAL-1841rnaSecStr |
tree | commitdiff |
| 2016-08-17 |
gmungoc | JAL-2172 reverted to not sorting column selection |
tree | commitdiff |
| 2016-08-17 |
gmungoc | JAL-2172 handle case where column selection is not... |
tree | commitdiff |
| 2016-08-16 |
gmungoc | JAL-2171 matching bracket default character for rna... |
tree | commitdiff |
| 2016-08-12 |
gmungoc | JAL-1841, bug fix in rna SS consensus, additions to... |
tree | commitdiff |
| 2016-08-04 |
Jim Procter | JAL-2110 comment on failing test (consider skipping... |
tree | commitdiff |
| 2016-07-19 |
gmungoc | JAL-391 corrected handling of gapped sequences |
tree | commitdiff |
| 2016-07-18 |
gmungoc | fileFormat enum wip changes |
tree | commitdiff |
| 2016-07-12 |
Jim Procter | JAL-2110 note about use case for when alignAsSameSequen... |
tree | commitdiff |
| 2016-07-12 |
Jim Procter | JAL-2110 test demonstrating limitation of current imple... |
tree | commitdiff |
| 2016-07-11 |
gmungoc | file format enum wip changes |
tree | commitdiff |
| 2016-07-07 |
gmungoc | JAL-2110 added alignAsSameSequences to handle 'direct... |
tree | commitdiff |
| 2016-07-06 |
gmungoc | JAL-2110 ensuring mapped dbrefs between protein and cds |
tree | commitdiff |
| 2016-07-04 |
gmungoc | Revert "JAL-2110 use shared alignment dataset when... |
tree | commitdiff |
| 2016-07-04 |
gmungoc | JAL-2110 use shared alignment dataset when copying... |
tree | commitdiff |
| 2016-07-04 |
gmungoc | JAL-2110 bug fix / test for searchDataset mappings... |
tree | commitdiff |
| 2016-07-01 |
gmungoc | JAL-2110 add 'products' parameter to filter results... |
tree | commitdiff |
| 2016-06-23 |
Jim Procter | JAL-2110 JAL-1551 formatting |
tree | commitdiff |
| 2016-06-23 |
Jim Procter | JAL-2110 enable and fix failing tests |
tree | commitdiff |
| 2016-06-23 |
Jim Procter | JAL-2110 enable and fix test |
tree | commitdiff |
| 2016-06-22 |
Jim Procter | JAL-2110 remove hardwired detection of search context... |
tree | commitdiff |
| 2016-06-21 |
gmungoc | JAL-2110 updated unit test to match code changes |
tree | commitdiff |
| 2016-06-20 |
Jim Procter | JAL-2110 pass dataset to makeCDSalignment |
tree | commitdiff |
| 2016-06-16 |
Jim Procter | JAL-2110 change test for desired behaviour of getCodonF... |
tree | commitdiff |
| 2016-06-16 |
Jim Procter | JAL-2110 throw implementation error if not given a... |
tree | commitdiff |
| 2016-06-14 |
gmungoc | JAL-2110 fixes to dbref resolution and mappings, use... |
tree | commitdiff |
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git://source.jalview.org / jalview.git / history