JAL-3141 forgot to add this file after extracting the class!
[jalview.git] / test / jalview / datamodel /
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
2018-05-11 gmungocJAL-2986 failing test added
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat...
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI...
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols...
2018-01-31 kiramtJAL-2759 test renaming
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting...
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns...
2018-01-30 kiramtJAL-2759 Keep numColumns up to date
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi...
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu...
2018-01-29 gmungocJAL-1270 testPadGaps() added
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update...
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence...
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after...
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after...
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal...
2018-01-18 kiramtJAL-2759 Updated test
2018-01-18 kiramtJAL-2759 unit tests (incomplete)
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC...
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after...
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
2018-01-15 kiramtJAL-2759 Minor doc and naming changes
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum...
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo...
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview...
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature...
2017-11-24 gmungocJAL-2808 update spike to latest
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character...
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls...
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;...
2017-11-17 kiramtJAL-2759 tidy
2017-11-17 kiramtJAL-2759 Update tests
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps
2017-11-10 gmungocJAL-2829 unit tests for failing cases
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-10-31 gmungocJAL-2792 test updated for 3 column table
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
2017-10-11 kiramtJAL-2742 test updates following review
2017-10-11 kiramtJAL-2742 minor test updates following review
2017-10-06 kiramtJAL-2674 Last moves to iterators
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence
2017-10-03 kiramtJAL-2647 unit test
2017-10-03 kiramtJAL-2674 testing
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-29 kiramtJAL-2674 Tidies
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator
2017-09-28 kiramtJAL-2647 more iterators
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-26 kiramtJAL-2742 uncomment test
2017-09-26 kiramtJAL-2674 uncomment test
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'...
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor.
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