create method to test HMM model as string
[jalview.git] / test / jalview / datamodel /
2017-06-20 TZVanaaltenrestructure file exporter
2017-06-15 TZVanaaltenUpdate HiddenMarkovModel class
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h...
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
2017-03-29 kiramtJAL-2388 New iterators and tests
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support...
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding...
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio...
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden...
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret...
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup()
2017-01-05 gmungocJAL-2371 tests added
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation
2016-11-29 gmungocJAL-2329 tests to confirm behaviour of Java extended...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-11-24 Jim ProcterJAL-2325 apply license to new source files
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-17 gmungocJAL-2327 add isContactFeature
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
2016-11-02 Jim ProcterJAL-345 JAL-1738 fix test (still passes)
2016-11-02 Jim ProcterJAL-354 JAL-1738 add returns SearchResultMatchI instanc...
2016-11-02 gmungocJAL-98 test updated for percentage rounded
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-11-01 Jim ProcterJAL-345 JAL-1738 strengthen test for cardinalty count...
2016-11-01 Jim ProcterJAL-345 JAL-1738 typo
2016-11-01 Jim ProcterJAL-345 JAL-1738 new tests (failing) for SearchResultsI...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 format tests
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for...
2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange
2016-10-04 gmungocJAL-2232 added test that failed before last fix, passes...
2016-10-03 gmungocJAL-2110 additional tests for setDatasetSequence, javad...
2016-09-28 Jim ProcterJAL-2210 JAL-2235 fix deriveSequence test for tightened...
2016-09-28 Jim ProcterJAL-2235 implicit test to check that exception is raise...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
2016-09-13 gmungocJAL-1803 tests added for PDBEntry.Type
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn...
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-09-05 gmungocJAL-2106 increased coverage for testGetPrimaryDbRefs
2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
2016-09-04 Jim ProcterJAL-1803 JAL-2106 patch tests for tighter PDB Primary...
2016-08-30 Jim ProcterJAL-2154 javadoc, fix underloaded version of assertData...
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-29 Jim ProcterJAL-2154 Optional message parameter for assertDatasetNo...
2016-08-29 Jim ProcterJAL-2154 new assertDatasetIsNormalised to trivially...
2016-08-29 Jim ProcterJAL-2154 additional test that removing a duplicate...
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-25 Jim ProcterJAL-2106 tighten DBRefEntry primary seq test for PDB
2016-08-25 Jim ProcterMerge branch 'refactor/JAL-2106_sourceDbRef_revision...
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR...
2016-08-24 Jim ProcterJAL-2106 TODO - verify Embl primary refs get added
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
2016-08-24 Jim ProcterJAL-2106 stricter check for 1:1 mapping (same numbering...
2016-08-24 Jim ProcterJAL-2106 rejig test to minimally verify patch that...
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