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JAL-2587 Removed annoying double repaint on hide insertions
[jalview.git]
/
test
/
jalview
/
datamodel
/
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-06-29
kiramt
JAL-2597 Fix and unit test
bug/JAL-2597
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Refactor HiddenColumns to use ArrayList instea...
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 More HiddenColumns refactoring. Tests passing.
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Further refactoring (still incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 updated HiddenColumns::findHiddenRegionPositio...
tree
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commitdiff
2017-06-07
gmungoc
JAL-2386 ensure group conservation shading is applied...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 get bitset representing hidden columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 method taking a BitSet for hiding columns
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 fixed broken asserts for SequenceI.getInsertio...
tree
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commitdiff
2017-06-04
Jim Procter
JAL-2291 SequenceI.getInsertionsAsBits for convenient...
tree
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commitdiff
2017-05-30
gmungoc
JAL-2570 don't zap group colour scheme when mapping...
tree
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commitdiff
2017-05-24
kiramt
JAL-2034 Added isDefined flag to SequenceGroup
tree
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commitdiff
2017-05-18
kiramt
JAL-2256 Corrected AllCols/Rows iterator behaviour...
bug/JAL-2256
tree
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commitdiff
2017-05-16
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
tree
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commitdiff
2017-05-15
Jim Procter
JAL-2507 fix test: knockon from capitalisation on secon...
bug/JAL-2507_rnasecstrstockholm
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 AlignmentAnnotation.isQuantitative() test
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/features/JAL-2388h...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 last separation of hidden columns/col selection
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Finished split of hidden columns and selected...
tree
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commitdiff
2017-04-24
gmungoc
JAL-2424 final contig now an inclusive range
bug/JAL-2424getVisibleContigs
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Alignment col and row collections with iterators
tree
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commitdiff
2017-04-19
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
tree
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commitdiff
2017-03-29
kiramt
JAL-2388 New iterators and tests
tree
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commitdiff
2017-03-17
kiramt
JAL-2437 Synchronization corrections and unit tests
tree
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commitdiff
2017-03-17
kiramt
JAL-2388 Renamed column and row subtraction functions
tree
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commitdiff
2017-03-14
kiramt
JAL-2388 New hidden cols/seqs functions to support...
tree
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commitdiff
2017-03-10
kiramt
JAL-2437 Fixed reordering of sequences when hiding...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 findColumnPosition returns 0 for cols in regio...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 Additional fix to ColumnSelection when hidden...
tree
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commitdiff
2017-03-03
kiramt
JAL-2429 Fix to ColumnSelection::findColumnPosition
tree
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commitdiff
2017-02-15
Jim Procter
JAL-2374 tests for SequenceGroup.contains
tree
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commitdiff
2017-02-15
Jim Procter
JAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
tree
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commitdiff
2017-02-09
gmungoc
JAL-2405 check for circular reference in SequenceGroup...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-19
gmungoc
JAL-2370 unit tests for extracted ColumnSelection.stret...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2370 fix bug when hiding a range including two...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
tree
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commitdiff
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-05
gmungoc
JAL-2374 unit test for (modified) Alignment.findGroup()
tree
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commitdiff
2017-01-05
gmungoc
JAL-2371 tests added
tree
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commitdiff
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
tree
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commitdiff
2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
tree
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
tree
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commitdiff
2016-11-24
Jim Procter
JAL-2325 apply license to new source files
tree
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commitdiff
2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
tree
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commitdiff
2016-11-17
gmungoc
JAL-2327 add isContactFeature
tree
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commitdiff
2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
tree
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commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
tree
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commitdiff
2016-11-02
Jim Procter
JAL-345 JAL-1738 fix test (still passes)
tree
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commitdiff
2016-11-02
Jim Procter
JAL-354 JAL-1738 add returns SearchResultMatchI instanc...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 test updated for percentage rounded
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 strengthen test for cardinalty count...
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 typo
tree
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commitdiff
2016-11-01
Jim Procter
JAL-345 JAL-1738 new tests (failing) for SearchResultsI...
tree
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commitdiff
2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 format tests
tree
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
tree
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commitdiff
2016-10-05
Jim Procter
Revert "JAL-2245 Castor mapping and code changes for...
tree
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commitdiff
2016-10-04
gmungoc
Merge branch 'bug/JAL-2245enaXmlChange' into develop
tree
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commitdiff
2016-10-04
gmungoc
JAL-2245 Castor mapping and code changes for change...
bug/JAL-2245enaXmlChange
tree
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commitdiff
2016-10-04
gmungoc
JAL-2232 added test that failed before last fix, passes...
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 additional tests for setDatasetSequence, javad...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2235 fix deriveSequence test for tightened...
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2235 implicit test to check that exception is raise...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 tests added for PDBEntry.Type
tree
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
tree
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commitdiff
2016-09-13
gmungoc
JAL-1803 extracted class ChainId to jalview.util.CaseIn...
tree
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commitdiff
2016-09-06
gmungoc
JAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 increased coverage for testGetPrimaryDbRefs
tree
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commitdiff
2016-09-05
gmungoc
JAL-2106 corrections to DBRefEntry.isPrimary code and...
tree
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commitdiff
2016-09-04
Jim Procter
JAL-1803 JAL-2106 patch tests for tighter PDB Primary...
tree
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commitdiff
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