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JAL-3285 add unmerged features to AlignViewportI
[jalview.git] / test / jalview / datamodel /
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... tree | commitdiff
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ tree | commitdiff
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-08-16 gmungocJAL-3082 one more test condition bug/JAL-3082selectRegex tree | commitdiff
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit... tree | commitdiff
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene... tree | commitdiff
2018-06-05 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed... tree | commitdiff
2018-05-11 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates tree | commitdiff
2018-05-11 gmungocJAL-2986 failing test added tree | commitdiff
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun tree | commitdiff
2018-03-30 gmungocJAL-2599 MapList from HMM nodes to consensus dataset... tree | commitdiff
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo tree | commitdiff
2018-03-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-03-16 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES tree | commitdiff
2018-03-13 gmungocJAL-2839 addResult ignores duplicates tree | commitdiff
2018-03-09 gmungocJAL-2839 Finder refactoring prior to fixing the defect tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... tree | commitdiff
2018-02-27 gmungocJAL-2668 method name change for clarity tree | commitdiff
2018-02-27 gmungocJAL-2717 JAL-2668 fixes to HMMER colour scheme display... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-02-23 gmungocJAL-2599 corrected case-insensitive symbol indexing tree | commitdiff
2018-02-23 gmungocJAL-2599 parser and datamodel use primitive double... tree | commitdiff
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc tree | commitdiff
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... tree | commitdiff
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... tree | commitdiff
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator tree | commitdiff
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review tree | commitdiff
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... tree | commitdiff
2018-01-31 kiramtJAL-2759 test renaming tree | commitdiff
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets tree | commitdiff
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check tree | commitdiff
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed tree | commitdiff
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... tree | commitdiff
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... tree | commitdiff
2018-01-30 kiramtJAL-2759 Keep numColumns up to date tree | commitdiff
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi... tree | commitdiff
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... tree | commitdiff
2018-01-29 gmungocJAL-1270 testPadGaps() added tree | commitdiff
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... tree | commitdiff
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... tree | commitdiff
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... tree | commitdiff
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns tree | commitdiff
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... tree | commitdiff
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... tree | commitdiff
2018-01-18 kiramtJAL-2759 Updated test tree | commitdiff
2018-01-18 kiramtJAL-2759 unit tests (incomplete) tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2018-01-15 kiramtJAL-2759 Minor doc and naming changes tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... tree | commitdiff
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... tree | commitdiff
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... tree | commitdiff
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc tree | commitdiff
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience tree | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... tree | commitdiff
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature... tree | commitdiff
2017-11-24 gmungocJAL-2808 update spike to latest tree | commitdiff
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns tree | commitdiff
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... tree | commitdiff
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing tree | commitdiff
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... tree | commitdiff
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call tree | commitdiff
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test tree | commitdiff
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator tree | commitdiff
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... tree | commitdiff
2017-11-17 kiramtJAL-2759 tidy tree | commitdiff
2017-11-17 kiramtJAL-2759 Update tests tree | commitdiff
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor tree | commitdiff
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