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Merge branch 'develop' into features/JAL-2446NCList
[jalview.git] / test / jalview / io /
2016-09-19 tcofoegbumerge tree | commitdiff
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers... tree | commitdiff
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... tree | commitdiff
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert tree | commitdiff
2016-09-07 gmungocJAL-2164 fix failing test tree | commitdiff
2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always... tree | commitdiff
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive... tree | commitdiff
2016-08-30 Jim ProcterJAL-2154 doc & AssertError trap for known failure case... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 endless loop fixed (hopefully :) ) tree | commitdiff
2016-08-29 Jim ProcterJAL-2154 catch insertion of duplicate CDS after retriev... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 ENSEMBL and Uniprot tests tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 report any db fetch failures as a fail at end tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 ensure pass increments actually result in... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 catch and report a failures when xrefed projec... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 Defer failing cross-ref combinations that... tree | commitdiff
2016-08-26 Jim ProcterJAL-2154 check that CDS panel is only nucleotide, and... tree | commitdiff
2016-08-23 Jim ProcterMerge branch 'develop' into bug/JAL-2154projectMappings tree | commitdiff
2016-08-22 Jim ProcterJAL-2154 - rejig test pass code for breadth-first ... tree | commitdiff
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 major rejigging of test looping again tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 disable DAS sources for Jalview2XML tests tree | commitdiff
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 fix looping structure so for a particular... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 drop unused hashes tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 testNG like assertAlignmentDatasetRefs static... tree | commitdiff
2016-08-19 Jim ProcterJAL-2154 use right reference string for recovering... tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 [test] verify reference integrity for alignmen... tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 formatting tree | commitdiff
2016-08-16 Jim ProcterJAL-2154 xref test harness - test fails if there are... tree | commitdiff
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... tree | commitdiff
2016-08-13 Jim ProcterJAL-2154 refactor CrossRef UI code to its own class tree | commitdiff
2016-08-13 Jim ProcterJAL-2154 check if the desktop is constructed before... tree | commitdiff
2016-08-11 Jim ProcterJAL-2154 clear the desktop before every 2xml test tree | commitdiff
2016-08-11 Jim ProcterJAL-2154 refactor setup/teardown from Jalview2xml for... tree | commitdiff
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties tree | commitdiff
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting... tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects tree | commitdiff
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx... tree | commitdiff
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... tree | commitdiff
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test... tree | commitdiff
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy... tree | commitdiff
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 fix the test tree | commitdiff
2016-06-20 Jim ProcterJAL-1369 failing test tree | commitdiff
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... tree | commitdiff
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... tree | commitdiff
2016-04-14 gmungocJAL-653 test updated for 'use ID for description' tree | commitdiff
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... tree | commitdiff
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 more test cases tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-11-30 gmungocJAL-653 test for 'resolving GFF mappings to sequences... tree | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests tree | commitdiff
2015-11-30 gmungocJAL-652 correct case for test file name tree | commitdiff
2015-11-23 gmungocJAL-653 Gff tests moved back in to FeaturesFileTest tree | commitdiff
2015-11-22 gmungocJAL-653 test for 'groups file' and mixed Jalview/GFF tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 formatting tree | commitdiff
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 Jim ProcterJAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
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