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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
test
/
jalview
/ io
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
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2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
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commitdiff
2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
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commitdiff
2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Fixed tests
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commitdiff
2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
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commitdiff
2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-12
gmungoc
JAL-1270 missing 'alwaysRun=true' added to setup/teardown
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commitdiff
2019-03-11
gmungoc
JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
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2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
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commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
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commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
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commitdiff
2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
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commitdiff
2019-02-04
hansonr
fixing array processing order
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commitdiff
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
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commitdiff
2019-01-28
Ben Soares
JAL-3141 fixed test
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commitdiff
2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
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commitdiff
2019-01-21
Ben Soares
JAL-3141 Fixed tests for new placement of suffix after...
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
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2019-01-09
Ben Soares
JAL-3141 removed redundant method to tests
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
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commitdiff
2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Fixing a few more tests that pass on a Mac...
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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commitdiff
2018-12-06
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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commitdiff
2018-11-15
gmungoc
JAL-2344 unit test updated for code change
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commitdiff
2018-11-08
gmungoc
JAL-1889 unit test tweaks for running on server
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commitdiff
2018-11-05
Ben Soares
JAL-3141 Slightly improved message and more thorough...
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
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commitdiff
2018-10-31
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into...
feature/JAL-3144noJTree
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commitdiff
2018-10-29
gmungoc
JAL-3144 SequenceFetcher without JDatabaseTree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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commitdiff
2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
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2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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commitdiff
2018-08-21
gmungoc
JAL-3032 MCview package renamed mc_view in test classes
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commitdiff
2018-08-17
gmungoc
JAL-3038 unit test updates for JalviewJS workaround...
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commitdiff
2018-08-03
Ben Soares
JAL-3061
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commitdiff
2018-08-02
Ben Soares
JAL-3053
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commitdiff
2018-07-31
bsoares
Stockholm file for test
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commitdiff
2018-07-20
gmungoc
JAL-3048 test updated for AlignExportSettings changes
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commitdiff
2018-07-18
Jim Procter
JAL-3048 update tests for alignment export bean refactoring
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commitdiff
2018-07-18
Jim Procter
JAL-3048 test for successful save with refactored saveA...
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
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2018-05-23
gmungoc
JAL-2997 unit test
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
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commitdiff
2018-04-06
Jim Procter
failing test for JAL-2223
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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commitdiff
2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
2018-02-20
gmungoc
JAL-2897 updated unit test for code change
features/JAL-1793VCF
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2891 clear all windows always beforeTest...
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2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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commitdiff
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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commitdiff
2018-01-09
gmungoc
JAL-2843 test roundtrip of feature colours and filters...
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commitdiff
2018-01-09
gmungoc
JAL-2843 unit tests for writing filters to Jalview...
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commitdiff
2017-12-19
Jim Procter
JAL-2880 disabled non-functional test - Jmol parser...
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commitdiff
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
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commitdiff
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
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commitdiff
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
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commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
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commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
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commitdiff
2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
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commitdiff
2017-11-16
gmungoc
JAL-2835 update test for CSQ data held as a Map
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
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commitdiff
2017-11-06
gmungoc
JAL-2820 include attribute value used for feature colou...
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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commitdiff
2017-10-24
gmungoc
JAL-2743 slightly fancier species/assembly matching...
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commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
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commitdiff
2017-10-19
gmungoc
JAL-2755 find gene loci for fetched xrefs where possible
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2017-10-09
gmungoc
JAL-2738 assertion for derived protein variant added
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commitdiff
2017-10-09
gmungoc
JAL-2738 remove commented code, unit test coverage
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-10-03
gmungoc
JAL-2738 update test for threaded VCFLoader
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