2017-11-16 |
gmungoc | JAL-2835 update test for CSQ data held as a Map |
tree | commitdiff |
2017-11-06 |
gmungoc | JAL-2820 include attribute value used for feature colou... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2743 slightly fancier species/assembly matching... |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 find gene loci for fetched xrefs where possible |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2738 assertion for derived protein variant added |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2738 remove commented code, unit test coverage |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 update test for threaded VCFLoader |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on rever... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'documentation/JAL-2675_release2102b1... |
tree | commitdiff |
2017-08-22 |
Jim Procter | JAL-2681 cross-ref selection for targeted debugging |
tree | commitdiff |
2017-08-22 |
Jim Procter | JAL-2681 source formatting |
tree | commitdiff |
2017-08-22 |
gmungoc | JAL-2680 remove all mappings in test teardown |
tree | commitdiff |
2017-08-10 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-1270 testProps should also enable debug logging |
tree | commitdiff |
2017-08-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-07-31 |
gmungoc | JAL-2631 test updated for added kd graduated feature... |
tree | commitdiff |
2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-08 |
kiramt | JAL-2591 Refactor HiddenColumns to use ArrayList instea... |
tree | commitdiff |
2017-06-08 |
kiramt | JAL-2591 More HiddenColumns refactoring. Tests passing. |
tree | commitdiff |
2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-01 |
Jim Procter | Merge branch 'features/JAL-1648_cache_user_inputs'... |
tree | commitdiff |
2017-05-31 |
tcofoegbu | Fixed failing tests |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures |
tree | commitdiff |
2017-05-25 |
Jim Procter | Merge branch 'develop' into features/JAL-1648_cache_use... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refact... |
tree | commitdiff |
2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct... |
tree | commitdiff |
2017-05-22 |
gmungoc | JAL-2490 add non-positional feature case to test prior... |
tree | commitdiff |
2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 additional tests/asserts prior to refactoring |
tree | commitdiff |
2017-05-15 |
Jim Procter | Merge branch 'bug/JAL-2507_rnasecstrstockholm' into... |
tree | commitdiff |
2017-05-15 |
Jim Procter | JAL-2507 - required callers to specify exact ignore... |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
tree | commitdiff |
2017-05-11 |
Jim Procter | JAL-2507 JAL-2509 allow whitespace==null for annotation... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2509 verify stockholm parser’s bracket regex is... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 JAL-2509 extend test to cover round trip of... |
tree | commitdiff |
2017-05-09 |
tcofoegbu | JAL-2520 unit test for improvement to download structur... |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 simplify round trip test via AppletFormatAdapter |
tree | commitdiff |
2017-05-09 |
Jim Procter | JAL-2507 test for alignment+rna annotation -> Stockholm... |
tree | commitdiff |
2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
tree | commitdiff |
2017-05-04 |
tcofoegbu | JAL-1648 resolved CR-JAL-41 review issues |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-1656 make RNAML->Stockholm round trip test pass... |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-2507 JAL-2509 allow differences in visibility of... |
tree | commitdiff |
2017-05-04 |
Jim Procter | JAL-2507 JAL-2509 new assert to compare secondary struc... |
tree | commitdiff |
2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
tree | commitdiff |
2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to |
tree | commitdiff |
2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy |
tree | commitdiff |
2017-04-27 |
Jim Procter | JAL-1933 patch jalview/io/testProps.jvprops to show... |
tree | commitdiff |
2017-04-27 |
gmungoc | JAL-2492 use SequenceFeatures.getNonPositionalFeatures() |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/features/JAL-2388h... |
tree | commitdiff |
2017-04-26 |
kiramt | JAL-2388 Update to hidden columns/column selection... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-25 |
tcofoegbu | JAL-2489 edited unit test code comment |
tree | commitdiff |
2017-04-25 |
tcofoegbu | JAL-2489 Unit test for bug |
tree | commitdiff |
2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
tree | commitdiff |
2017-04-24 |
tcofoegbu | JAL-1648 added unit test for AppCache |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
tree | commitdiff |
2017-03-29 |
gmungoc | JAL-2416 revert to '*' not '-' in score matrix, handle... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols... |
tree | commitdiff |
2017-03-28 |
gmungoc | JAL-2416 more test coverage of matrix parser |
tree | commitdiff |
2017-03-27 |
gmungoc | JAL-2416 parse score matrices in either NCBI or AAindex... |
tree | commitdiff |
2017-03-24 |
gmungoc | JAL-2428 simplify TreeModel constructors, add getOrigin... |
tree | commitdiff |
2017-03-06 |
gmungoc | JAL-2428 separate TreeModel from TreeBuilder/NJTree... |
tree | commitdiff |
2017-02-21 |
gmungoc | JAL-2416 support roundtrip print/parse of ScoreMatrix |
tree | commitdiff |
2017-02-17 |
gmungoc | JAL-2416 allow space in score matrix name |
tree | commitdiff |
2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
tree | commitdiff |
2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
tree | commitdiff |
2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
tree | commitdiff |
2017-01-12 |
gmungoc | JAL-2344 now flagging formats as 'identifiable' instead... |
tree | commitdiff |
2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
tree | commitdiff |
2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
tree | commitdiff |
2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 getColour() renamed to getColourScheme(),... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
tree | commitdiff |
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