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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
test
/
jalview
/
util
/
2023-11-13
James Procter
Merge branch 'develop' into bug/JAL-4059_update_swingJS...
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 JAL-1551 source license
tree
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commitdiff
2023-11-02
Ben Soares
JAL-4059 updated test for StringUtils
tree
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commitdiff
2023-10-31
Ben Soares
JAL-4059 simpler reimplementation of StringUtils.separa...
tree
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commitdiff
2023-09-20
James Procter
JAL-4274 fix test failure message typo
tree
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commitdiff
2023-09-13
Ben Soares
JAL-4274 comments to help follow the tests
feature/JAL-4274_configurable_bitmap_export_preferences
tree
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commitdiff
2023-09-13
Ben Soares
JAL-4274 Tests for BIS defaults and overrides
tree
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commitdiff
2023-09-13
Ben Soares
JAL-4274 Use Cache BITMAP_* if no other image restricti...
tree
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commitdiff
2023-09-12
Ben Soares
JAL-4277 No longer using getCanonicalPath() for parent...
tree
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commitdiff
2023-09-07
Ben Soares
Merge branch 'develop' into bug/JAL-4277_dirname_substi...
tree
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commitdiff
2023-09-07
Ben Soares
JAL-4277 fixed and improved tests
tree
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commitdiff
2023-09-07
Ben Soares
JAL-4277 Corrected choice of all or last opened linkedI...
tree
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commitdiff
2023-09-07
James Procter
JAL-4090 JAL-4160 JAL-4274 image export dimensions...
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 mild improvement to test
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Fixed ~ based test for build server
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Add substituteHomeDir to getDirname(). Tighten...
tree
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commitdiff
2023-04-05
Ben Soares
JAL-629 Tests for FileUtils. Tidying counter substituti...
tree
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commitdiff
2023-02-24
Ben Soares
JAL-629 better test fixes. --props=... instead of ...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 fixed a Log4j test by adding --debug arg
tree
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commitdiff
2022-11-13
Ben Soares
JAL-4019 Added tests for new Nucleotide sequence detection
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to tests
spike/try_spotless_JAL-3438
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
Merge branch 'develop' into update/JAL-3949_abstracted_...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2022-02-04
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence_for211...
bug/JAL-3806_without_shared_DS_for_2_11_2
tree
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commitdiff
2022-01-28
Jim Procter
Merge branch 'merge/develop_JAL-3725' into develop
tree
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commitdiff
2022-01-26
Jim Procter
Merge branch 'task/JAL-3763_newDatasetForCds' into...
tree
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commitdiff
2022-01-26
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
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commitdiff
2021-10-01
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
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commitdiff
2021-09-16
Ben Soares
JAL-3761 listToArray became rangeListToArray
tree
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commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom/To revised with tests; unused...
tree
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commitdiff
2021-09-16
gmungoc
JAL-3761 debugged and working (but not tidied) locateIn...
tree
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commitdiff
2021-09-16
gmungoc
JAL-3761 locateInFrom2 work in progress commit
tree
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commitdiff
2021-09-15
gmungoc
JAL-3761 unit test for MapList.countPos()
tree
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commitdiff
2021-09-15
gmungoc
JAL-3761 failing test, formatting, method renamed
tree
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commitdiff
2021-09-15
gmungoc
JAL-3761 failing tests for locateInFrom/To with overlap...
tree
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commitdiff
2021-09-15
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
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commitdiff
2021-03-04
Jim Procter
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
tree
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commitdiff
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
tree
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commitdiff
2021-02-04
gmungoc
JAL-3806 fix and test for one-to-many sequence mapping...
bug/JAL-3806_mappingCoversCDS_reprise
tree
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commitdiff
2020-10-29
Jim Procter
Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11...
tree
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commitdiff
2020-10-29
gmungoc
JAL-3700 mapped sequence group includes short (or all...
patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3
tree
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commitdiff
2020-10-28
gmungoc
JAL-3725 helper methods for computing mapped feature...
tree
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commitdiff
2020-10-28
Jim Procter
JAL-3760 fix tests for changed behaviour
tree
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commitdiff
2020-10-22
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
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commitdiff
2020-10-22
gmungoc
JAL-3700 JAL-3763 create datasets for test sequences
tree
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commitdiff
2020-10-22
gmungoc
JAL-3700 additions and corrections to unit tests
tree
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commitdiff
2020-10-22
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
tree
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commitdiff
2020-10-08
gmungoc
JAL-3700 JAL-3763 create datasets for test sequences
tree
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commitdiff
2020-09-29
Jim Procter
JAL-3760 fix tests for changed behaviour
bug/JAL-3760_protsTreatedAsNucleotides
tree
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commitdiff
2020-09-17
gmungoc
JAL-3700 additions and corrections to unit tests
bug/JAL-3700_mapSequenceSelection
tree
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commitdiff
2020-08-03
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-07-21
gmungoc
JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'bug/JAL-3574filterByPOS' into documentati...
tree
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commitdiff
2020-04-14
Jim Procter
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 test coverage corners
bug/JAL-3574filterByPOS
tree
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commitdiff
2020-04-13
gmungoc
JAL-3574 Matcher with integer/long value pattern (e...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-09
gmungoc
JAL-3528 unit tests added for failed lookup, Javadoc
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3531 failing test
tree
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commitdiff
2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
tree
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commitdiff
2019-03-29
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-03-28
gmungoc
JAL-1889 patch for failing isControDown test on build...
tree
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commitdiff
2019-03-28
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-03-28
gmungoc
Merge branch 'feature/JAL-3181linkOrdering' into develop
tree
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commitdiff
2019-03-23
gmungoc
JAL-1889 remove debug logging, add updateLayout()
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 diagnostics for failing test on server
tree
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/tasks/JAL-3035_rem...
tree
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commitdiff
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 simplified code and test
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-18
gmungoc
JAL-3048 DialogRunnerI reduced to minimal implementation
tree
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commitdiff
2018-12-18
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-17
gmungoc
JAL-3048 updated test class (not on classpath!) for...
tree
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Fixing a few more tests that pass on a Mac...
tree
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
tree
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commitdiff
2018-12-10
gmungoc
JAL-3048 wip externalise trigger from RunResponse
tree
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commitdiff
2018-12-10
gmungoc
JAL-3048 DialogRunner changes (wip)
tree
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commitdiff
2018-11-01
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into
tree
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commitdiff
2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-07-02
Jim Procter
JAL-3048 allow a chain of responses for a particular...
tree
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commitdiff
2018-06-29
Jim Procter
JAL-3048 jalview.utils.dialogrunner.DialogRunner allows...
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
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commitdiff
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