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FileFormatI further tweaks, clean compile
[jalview.git]
/
test
/
jalview
/
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-29
gmungoc
Merge branch 'bug/JAL-1841rnaSecStr' into develop
tree
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commitdiff
2016-08-29
gmungoc
JAL-1448 updated unit test for last change
tree
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commitdiff
2016-08-29
gmungoc
JAL-1841 robustness fix
bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-26
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-26
gmungoc
JAL-2049 set Ensembl variant source to ENSEMBL if ...
tree
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commitdiff
2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code tidying
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
tree
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commitdiff
2016-08-22
gmungoc
JAL-2011 adjust method to fix failing unit test
tree
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commitdiff
2016-08-19
gmungoc
JAL-2174 bug fixes + refactoring to allow + unit tests
tree
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commitdiff
2016-08-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-08-19
tcofoegbu
JAL-1803 unit test for PDB chainCode save/restore from...
tree
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commitdiff
2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 reverted to not sorting column selection
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 handle case where column selection is not...
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-16
gmungoc
JAL-2172 unit test added
tree
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commitdiff
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
tree
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commitdiff
2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-12
gmungoc
JAL-1841, bug fix in rna SS consensus, additions to...
tree
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commitdiff
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
tree
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commitdiff
2016-08-04
gmungoc
JAL-2164 changed to be Java 1.7 compliant
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import setting...
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
task/JAL-2164_mcviewforoldjalviewprojects
tree
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commitdiff
2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverEx...
tree
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commitdiff
2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2164 revert tests depending on import of legacy...
tree
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commitdiff
2016-07-29
tcofoegbu
JAL-2157 fixed Jalview2xmlTest
tree
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commitdiff
2016-07-27
tcofoegbu
JAL-1919 added codes for End-2-End scan for sequence...
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
tree
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
tree
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commitdiff
2016-07-19
gmungoc
JAL-391 corrected handling of gapped sequences
tree
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commitdiff
2016-07-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-18
gmungoc
fileFormat enum wip changes
tree
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commitdiff
2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 note about use case for when alignAsSameSequen...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 test demonstrating limitation of current imple...
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-09
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
features/JAL-2110_crossRefDuplications
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-07-07
gmungoc
JAL-2110 added alignAsSameSequences to handle 'direct...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 AlignmentUtils.alignCdsAsProtein implemented
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 ensuring mapped dbrefs between protein and cds
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL...
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 fixes and tests for adding dbrefs to EMBL...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 added another test case (should fail but doesn't)
tree
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 bug fix / test for searchDataset mappings...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
tree
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commitdiff
2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
tree
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commitdiff
2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-06-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-29
tcofoegbu
JAL-1479 added test case to elaborate getEntityByMostOp...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-29
gmungoc
JAL-1270 avoid overwriting .jalview_properties with...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-29
gmungoc
JAL-1369 fix bug reloading a project with group sequenc...
tree
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commitdiff
2016-06-28
tcofoegbu
JAL-1479 minor refactor and housekeeping
tree
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commitdiff
2016-06-28
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-28
tcofoegbu
JAL-1479 improved SiftsClient test coverage and impleme...
tree
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commitdiff
2016-06-27
gmungoc
JAL-1369 additional asserts in testStoreAndRecoverRefer...
tree
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commitdiff
2016-06-27
gmungoc
JAL-1270 unit tests for HiddenSequences
tree
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commitdiff
2016-06-24
tcofoegbu
JAL-1960 updated unit test to include the test case...
tree
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commitdiff
2016-06-23
Jim Procter
Merge branch 'develop' into merge_JAL-2110
tree
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commitdiff
2016-06-23
Jim Procter
JAL-1270 test group fix
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 JAL-1551 formatting
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 enable and fix failing tests
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 enable and fix test
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 refactor sequenceFetcherTest to allow verifyin...
tree
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commitdiff
2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
tree
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commitdiff
2016-06-22
gmungoc
JAL-2015 fixed bug in copy constructor and added tests
tree
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commitdiff
2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-06-21
gmungoc
JAL-1270 remove test artefact file after test
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1270 ensure before/after clauses have at least...
tree
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commitdiff
2016-06-21
gmungoc
JAL-1270 added runAlways=true to setUp method
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 make sure desktop is cleared before test starts
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 jalview2xml tests need to be run sequentially
tree
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commitdiff
2016-06-21
gmungoc
JAL-2110 updated unit test to match code changes
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 fix the test
tree
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commitdiff
2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1369 failing test
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2110 pass dataset to makeCDSalignment
tree
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commitdiff
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