2016-05-20 |
gmungoc | JAL-2114 explicit invalid test cases added |
tree | commitdiff |
2016-05-20 |
gmungoc | JAL-2114 accept "<123..178" or "123..>178" format |
tree | commitdiff |
2016-05-20 |
gmungoc | JAL-2049 unit test updated for HGVS syntax, feature... |
tree | commitdiff |
2016-05-19 |
gmungoc | JAL-2114 added single-locus case and more error tests |
tree | commitdiff |
2016-05-19 |
gmungoc | JAL-2114 parser + tests for GenBank location descriptors |
tree | commitdiff |
2016-05-18 |
gmungoc | JAL-2049 use HGVS notation for variant on protein residue |
tree | commitdiff |
2016-05-17 |
tcofoegbu | merge |
tree | commitdiff |
2016-05-17 |
tcofoegbu | JAL-1270 Fixed anntatedPDBFileInputTest and updated... |
tree | commitdiff |
2016-05-13 |
gmungoc | JAL-2105 capture Ensembl data version, check REST versi... |
tree | commitdiff |
2016-05-09 |
tcofoegbu | merge |
tree | commitdiff |
2016-05-09 |
tcofoegbu | JAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin... |
tree | commitdiff |
2016-05-09 |
gmungoc | JAL-2098 identify feature file with "<" in feature... |
tree | commitdiff |
2016-05-09 |
gmungoc | JAL-2018 export graduated feature colours correctly |
tree | commitdiff |
2016-05-05 |
Jim Procter | JAL-192 patch for off-by one and pathological case... |
tree | commitdiff |
2016-05-03 |
gmungoc | JAL-2050 hide introns also when fetching Ensembl xrefs... |
tree | commitdiff |
2016-05-02 |
Jim Procter | JAL-1270 move some Network tests to External (require... |
tree | commitdiff |
2016-05-02 |
Jim Procter | JAL-1270 capitalise test groups |
tree | commitdiff |
2016-04-29 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-29 |
Jim Procter | JAL-192 need visible and actual sequence limits for... |
tree | commitdiff |
2016-04-29 |
Jim Procter | JAL-192 fix bounds when no hidden regions, and when... |
tree | commitdiff |
2016-04-29 |
Jim Procter | JAL-192 ‘efficiently’ locate visible bounds for a seque... |
tree | commitdiff |
2016-04-28 |
tcofoegbu | JAL-1563 fixed failing tests for FTS Rest Client core |
tree | commitdiff |
2016-04-27 |
tcofoegbu | JAL-1563 Added Id (Uniprot Id) to the dynamic column... |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2079 update GPL header for new Xfam tests |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network... |
tree | commitdiff |
2016-04-26 |
tcofoegbu | JAL-2071 improvement to get column data files as InputS... |
tree | commitdiff |
2016-04-26 |
tcofoegbu | JAL-2071 House keeping |
tree | commitdiff |
2016-04-25 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-04-25 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-04-25 |
tcofoegbu | JAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search |
tree | commitdiff |
2016-04-24 |
Jim Procter | Merge branch 'JAL-2075_features_hiddeng' into develop |
tree | commitdiff |
2016-04-24 |
Jim Procter | JAL-2075 test showing hidden columns bug in feature... |
tree | commitdiff |
2016-04-24 |
Jim Procter | JAL-2075 refactor FeatureScoreModel to native testNG... |
tree | commitdiff |
2016-04-23 |
Jim Procter | JAL-2075 findPosition for SeqCigar (with test) |
tree | commitdiff |
2016-04-22 |
tcofoegbu | JAL-2071 further refactoring, optimisation, and house... |
tree | commitdiff |
2016-04-22 |
gmungoc | JAL-2068 code and test for case of minValue == maxValue |
tree | commitdiff |
2016-04-22 |
gmungoc | JAL-2068 convenience helper method for graduated score... |
tree | commitdiff |
2016-04-19 |
tcofoegbu | JAL-2071 architectural improvement for Plugable Free... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 add ID,clinical_significance to feature attrib... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 clinical_significance shown on sequence featur... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2049 revised computePeptideVariants to transfer... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-1705 refactored/utility methods to detect e.g.... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-653 test updated for 'use ID for description' |
tree | commitdiff |
2016-04-13 |
Jim Procter | JAL-2046 test to demonstrate feature duplication bug |
tree | commitdiff |
2016-04-13 |
Jim Procter | Merge branch 'bug/JAL-2046_ds_sharing_features_broken... |
tree | commitdiff |
2016-04-13 |
tcofoegbu | JAL-1270 more fix for failing Functional test |
tree | commitdiff |
2016-04-13 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-13 |
tcofoegbu | JAL-1270 Fixed failing tests due to race conditions... |
tree | commitdiff |
2016-04-12 |
gmungoc | JAL-2049 separate protein variant per dna variant ... |
tree | commitdiff |
2016-04-11 |
tcofoegbu | JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... |
tree | commitdiff |
2016-04-08 |
Jim Procter | Merge branch 'feature/JAL-2050_intronhidden' into develop |
tree | commitdiff |
2016-04-08 |
Jim Procter | JAL-2050 JAL-1722 new getSelectedRange() method to... |
tree | commitdiff |
2016-04-06 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-06 |
tcofoegbu | JAL-1960 updated test to capture new behaviour improvement |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC about cyclic dataset sequence references... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 revise test for ambiguous case |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 ambiguous test for addSequenceFeature when... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC on addSequenceFeature behaviour after... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 test behaviour of copy constructor in differen... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2046 basic test to make sure any derived sequence... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2001 faster getMax/getMin selected column, with... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 ensure the right mapping is used to align... |
tree | commitdiff |
2016-04-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2046 fix for broken test for deriveSequence |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 reworked AlignmentUtils.makeCdsAlignment and... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-653 updated test to match parsing of multi-valued... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 tweak to MapList.toString for debugging |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 generalised getLength() to handle [start1... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 test updated for canonicalised UNIPROT sequenc... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2037 set DBRefEntry.version to "0" not "" in EMBL... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 fetch all Ensembl xrefs (except GO terms) |
tree | commitdiff |
2016-03-28 |
tcofoegbu | JAL-1919 Fixed broken test in DBRefUtilsTest |
tree | commitdiff |
2016-03-23 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-23 |
gmungoc | JAL-1705 add DBRefEntry for 'self' to retrieved transcr... |
tree | commitdiff |
2016-03-22 |
tcofoegbu | resolve conflict with Mungo's merge |
tree | commitdiff |
2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
tree | commitdiff |
2016-03-22 |
gmungoc | JAL-1191 isolated SequenceOntology (BioJava wrapper... |
tree | commitdiff |
2016-03-22 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
tcofoegbu | JAL-1919 refactor moved StructureViewerSettings |
tree | commitdiff |
2016-03-21 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings |
tree | commitdiff |
2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 corrected Javadoc, added test for anonymous... |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
2016-03-15 |
tcofoegbu | JAL-1919 refined structure view annotation settings... |
tree | commitdiff |
2016-03-11 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1270 unit test for SequenceIdMatcher.SeqIdName |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-1818 reimplemented sequence and annotation processi... |
tree | commitdiff |
2016-03-07 |
gmungoc | JAL-2023 CDS sequences added to / share alignment dataset |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 fixed bug causing PDBfile test failure |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 unit test for aligning with incomplete start... |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
2016-03-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
2016-02-26 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-1994 fix for broken tests |
tree | commitdiff |
2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
next |