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JAL-4059 Updated jmoljs and _j2sclasslist.txt
[jalview.git]
/
test
/
2023-05-03
Ben Soares
JAL-629 added eps and imagemap. Added --output and...
tree
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commitdiff
2023-05-02
Ben Soares
JAL-629 Changed --newframe and --allframes to --new...
tree
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commitdiff
2023-05-01
Ben Soares
JAL-629 real life test for --allframes
tree
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commitdiff
2023-04-30
Ben Soares
JAL-629 Change behaviour of --open GLOB to increment...
tree
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commitdiff
2023-04-29
Ben Soares
JAL-629 Added --all arg, [*] linkedId and functionality...
tree
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfile1 after subval separator change
tree
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfiletests after subval separator...
tree
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commitdiff
2023-04-28
Ben Soares
JAL-629 Fixed the argfile after subval separator change
tree
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commitdiff
2023-04-28
Ben Soares
JAL-629 Change colour scheme shortnames to something...
tree
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commitdiff
2023-04-27
Ben Soares
JAL-629 changed args in tests
tree
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commitdiff
2023-04-26
Ben Soares
JAL-629 shorter wait times for this test
tree
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commitdiff
2023-04-26
Ben Soares
JAL-629 JAL-4167 Added args to tests. Fixed potential...
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Add --nowebdiscovery. Distinguish arg=="open...
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Put commandsTest.jvprops in the right place
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 loaded props from arg in failing build server...
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Dynamic sleep in test, more diagnostics
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Dynamic sleep in test
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Move diagnostics to the right place
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Diagnosis output for failing test
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 Count VISIBLE annotations for tests
tree
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commitdiff
2023-04-24
Ben Soares
JAL-629 attempt to fix tests on build server (more...
tree
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commitdiff
2023-04-23
Ben Soares
JAL-629 single threaded test for viewer window for...
tree
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commitdiff
2023-04-23
Ben Soares
JAL-629 even longer wait for viewer window for build...
tree
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commitdiff
2023-04-23
Ben Soares
JAL-629 longer wait for viewer window for build server
tree
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commitdiff
2023-04-23
Ben Soares
JAL-629 Change --open to --append and --opennew to...
tree
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commitdiff
2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
tree
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commitdiff
2023-04-12
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 mild improvement to test
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Fixed ~ based test for build server
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Add substituteHomeDir to getDirname(). Tighten...
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Put old -props back as will now use old parser
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 Fix non-multi string bootstrap arg bug.
tree
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commitdiff
2023-04-12
Ben Soares
JAL-629 setprop test disabled as feature is disabled
tree
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commitdiff
2023-04-05
Ben Soares
JAL-629 Tests for FileUtils. Tidying counter substituti...
tree
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commitdiff
2023-04-04
Ben Soares
JAL-629 --initsubstitutions as a bootstrap arg, new...
tree
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commitdiff
2023-04-03
Ben Soares
JAL-629 sort files from java glob for predictability...
tree
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commitdiff
2023-04-03
Ben Soares
JAL-629 Removed --headless to fix CommandsTest
tree
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commitdiff
2023-04-03
Ben Soares
JAL-629 added setprop. More filename based substitution...
tree
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commitdiff
2023-03-30
Ben Soares
JAL-629 More extensive tests with real files being...
tree
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commitdiff
2023-03-29
Ben Soares
JAL-629 extensive tests for ArgParser features
tree
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commitdiff
2023-03-29
Ben Soares
JAL-629 Added --opennew --nonews --nosplash. Added...
tree
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commitdiff
2023-03-24
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
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commitdiff
2023-03-24
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-03-24
Ben Soares
JAL-629 Test tidyup
tree
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commitdiff
2023-03-23
Ben Soares
JAL-629 don't clear appProps in tests
tree
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commitdiff
2023-03-23
Ben Soares
JAL-629 refactor ArgParser and helper classes all to...
tree
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commitdiff
2023-03-21
Ben Soares
JAL-629 null checks for Desktop.instance.closeAll(...
tree
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commitdiff
2023-03-20
James Procter
JAL-4134 override default hasTree so PAE tree is saved!
tree
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commitdiff
2023-03-20
James Procter
JAL-4153 longer Thread.sleep() calls in the hope that...
tree
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commitdiff
2023-03-20
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
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commitdiff
2023-03-20
James Procter
JAL-4150 test and quick patch copying code from AlignFr...
tree
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commitdiff
2023-03-20
James Procter
JAL-2349 test TODOs
tree
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commitdiff
2023-03-20
James Procter
JAL-2349 fix off by one when resolving columns for...
tree
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commitdiff
2023-03-17
James Procter
JAL-4134 store/restore Newick tree for PAE annotation row
tree
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commitdiff
2023-03-16
Ben Soares
JAL-629 fixed a test failing when run without a Jalview...
tree
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commitdiff
2023-03-15
James Procter
JAL-4091 JAL-629 ‘Add Reference Annotations’ takes...
tree
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commitdiff
2023-03-15
James Procter
JAL-4134 JAL-3855 store/restore groups, tree and thresh...
tree
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commitdiff
2023-03-15
Ben Soares
JAL-3833 fixed HiDPI test for macOS
tree
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commitdiff
2023-03-15
Ben Soares
JAL-629 Commands more objecty, less classy. FileLoader...
tree
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commitdiff
2023-03-13
Ben Soares
JAL-629 teardown in CommandsTest
tree
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commitdiff
2023-03-11
Ben Soares
JAL-629 start of CommandsTest. More ArgParserTests.
tree
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commitdiff
2023-03-10
Ben Soares
JAL-629 start of tests and more examples
tree
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commitdiff
2023-03-09
Ben Soares
JAL-629 start of tests
tree
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commitdiff
2023-03-08
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
tree
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commitdiff
2023-03-02
Ben Soares
JAL-629 Some refactoring to allow more flexible use...
tree
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commitdiff
2023-02-28
Ben Soares
JAL-629 Firm up bootstrapArgs. Correct '-colour' in...
tree
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commitdiff
2023-02-27
James Procter
JAL-4134 allow tree groups to be stored/recovered on...
tree
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commitdiff
2023-02-27
Ben Soares
JAL-629 JAL-4124 JAL-3855 remove deleted debugging...
tree
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commitdiff
2023-02-27
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
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commitdiff
2023-02-24
James Procter
JAL-629 JAL-4124 JAL-3855 test to check we can import...
tree
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commitdiff
2023-02-24
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
features/JAL-3858_PAEsInProjects
tree
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commitdiff
2023-02-24
Ben Soares
JAL-629 better test fixes. --props=... instead of ...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 test fixing
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 group columns using a tree cut - seems to...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 Add debug messages for more failing tests
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 - brutal hack to build a tree clustering colum...
tree
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commitdiff
2023-02-23
Ben Soares
JAL-629 fixed a Log4j test by adding --debug arg
tree
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commitdiff
2023-02-23
James Procter
JAL-4134 - refactor tree calculation code to work with...
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 persist PAE matrix (only so far) as serialised...
tree
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commitdiff
2023-02-22
James Procter
JAL-1551 source formatting
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 simple test for PAE matrix recovery
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-16
James Procter
JAL-1713 don’t close an automatically created overview...
tree
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commitdiff
2023-02-15
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-02-15
James Procter
Passing test for JAL-4127 failing on the JAL-1713 branch
tree
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commitdiff
2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-02-10
James Procter
JAL-3077 broken conflict resolve resulted in failing...
tree
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commitdiff
2023-02-10
James Procter
JAL-4126 comment out closeAll - so we can visually...
tree
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commitdiff
2023-02-10
James Procter
JAL-4126 failing test - colour scheme appears to be...
tree
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commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 JAL-2144 ‘invalid’ DBRefEntry has a null versi...
patch/JAL-4119_sifts_ftp_split
tree
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commitdiff
2023-02-02
James Procter
JAL-4119 use split_xml directories rather than the...
tree
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commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
tree
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commitdiff
2023-01-26
Ben Soares
JAL-4118 remove unnecessary sleep from QuitHandlerTest
tree
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commitdiff
2023-01-26
Ben Soares
JAL-1988 Add a sleep to file save test to give time...
tree
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commitdiff
2023-01-25
James Procter
Merge branch 'new_feature/JAL-4019_ambiguous_base_colou...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/Release_2_11_2_6_Branch' into develop
tree
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commitdiff
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