JAL-2110 random stuff
[jalview.git] / test /
2016-03-21 tcofoegbudevelop merge
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous...
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on...
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-11 gmungocJAL-1270 unit test for SequenceIdMatcher.SeqIdName
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi...
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure
2016-03-03 gmungocJAL-1705 unit test for aligning with incomplete start...
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-26 tcofoegbudevelop merge
2016-02-26 tcofoegbuJAL-1994 fix for broken tests
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac...
2016-02-19 gmungocJAL-1705 updated for change to CrossRef signature
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for...
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id...
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon
2016-02-12 gmungocJAL-1270 remove trailing space + test
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test
2016-02-12 gmungocJAL-1705 JAL-1686 stronger SequenceFeature.equals(...
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed...
2016-02-09 tcofoegbumerge develop
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks...
2016-02-01 gmungocJAL-1705 further unit tests
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-01 gmungocJAL-1705 tests added
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard...
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and...
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing...
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name...
2016-01-26 tcofoegbudevelop merge
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and...
2016-01-21 gmungocJAL-1705 removed (only) usage of otherwise unused constant
2016-01-21 gmungocJAL-1705 features transferred to CDS sequence; makeExon...
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple...
2016-01-21 gmungocJAL-1705 tidy and todo comment, no functional change
2016-01-21 gmungocJAL-1705 tests for amended toString
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug...
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2016-01-11 gmungocJAL-1989 map hidden column ranges
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2016-01-07 tcofoegbumerge
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS...
2016-01-05 gmungocJAL-653 updating 'align as' tests to match latest tweak...
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_...
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions...
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more...
2015-12-22 gmungocJAL-1191 more test cases
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via...
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding...
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl...
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from...
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge...
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings'
2015-12-03 gmungocJAL-653 handle reverse strand mapping in SearchResults...
2015-12-03 gmungocJAL-653 mappings always reside on the dataset alignment...
2015-12-03 gmungocJAL-653 handle reverse strand mappings also
2015-12-03 gmungocJAL-1827 code and comment tidy up
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better
2015-11-30 gmungocJAL-653 test for 'resolving GFF mappings to sequences...
2015-11-30 gmungocJAL-653 (experimental) methods to resolve dummy to...
2015-11-30 gmungocJAL-1270 constructor test added
2015-11-30 gmungocJAL-653 getStrand javadoc/refactor/test
2015-11-30 gmungocJAL-1270 constructor tests added, compiler warnings...
2015-11-30 gmungocJAL-652 further refactoring / tests
2015-11-30 gmungocJAL-652 correct case for test file name
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges
2015-11-23 gmungocJAL-653 Gff tests moved back in to FeaturesFileTest
2015-11-22 gmungocJAL-653 test for 'groups file' and mixed Jalview/GFF
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi...
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS...
2015-11-11 tcofoegbumerge
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping
2015-11-06 gmungocJAL-1946 unit tests (and comments) for PID() function
2015-11-06 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
2015-10-30 Jim ProcterJAL-1954 formatting
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali...
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for...
2015-10-28 gmungocJAL-1946 additional unit test cases for PID calculation
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
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