jalview.git
5 years agoJAL-3130 call Jalview via the Test JVM’s JAVA_HOME/bin/java
Jim Procter [Tue, 16 Apr 2019 16:38:18 +0000 (17:38 +0100)]
JAL-3130 call Jalview via the Test JVM’s JAVA_HOME/bin/java

5 years agoJAL-3130 refactored ‘clover’ to ‘use_clover’ since clover is an ambiguous property...
Jim Procter [Tue, 16 Apr 2019 16:36:45 +0000 (17:36 +0100)]
JAL-3130 refactored ‘clover’ to ‘use_clover’ since clover is an ambiguous property - still offer -Pclover=true as command line switch to enable clover coverage

5 years agoJAL-3130 JAL-1889 reportCurrentWorkingDirectory test to report absolute path when...
Jim Procter [Tue, 16 Apr 2019 15:06:52 +0000 (16:06 +0100)]
JAL-3130 JAL-1889 reportCurrentWorkingDirectory test to report absolute path when running command line tests

5 years agoJAL-3130 JAL-1889 report absolute paths for CommandLineTests
Jim Procter [Tue, 16 Apr 2019 13:28:44 +0000 (14:28 +0100)]
JAL-3130 JAL-1889 report absolute paths for CommandLineTests

5 years agoJAL-3130 JAL-1889 report absolute paths for CommandLineTests
Jim Procter [Tue, 16 Apr 2019 13:14:10 +0000 (14:14 +0100)]
JAL-3130 JAL-1889 report absolute paths for CommandLineTests

5 years agoJAL-3130 JAL-1889 report absolute paths for CommandLineTests
Jim Procter [Tue, 16 Apr 2019 13:09:12 +0000 (14:09 +0100)]
JAL-3130 JAL-1889 report absolute paths for CommandLineTests

5 years agoJAL-3196 change default are resource properties to http://www.jalview.org/getdown/jre
Jim Procter [Tue, 16 Apr 2019 12:29:10 +0000 (13:29 +0100)]
JAL-3196 change default are resource properties to jalview.org/getdown/jre

5 years agoReinstate imports from "JAL-1889 JAL-3130 patch broken tests" commit 05efc2ac3c6427a4...
Jim Procter [Tue, 16 Apr 2019 10:01:10 +0000 (11:01 +0100)]
Reinstate imports from "JAL-1889 JAL-3130 patch broken tests" commit 05efc2ac3c6427a4dabce842ebbd6f2ae17f49b9.

5 years agoJAL-1189 JAL-3130 patch broken tests
Jim Procter [Tue, 16 Apr 2019 09:33:42 +0000 (10:33 +0100)]
JAL-1189 JAL-3130 patch broken tests

5 years agoJAL-3130 Somewhere in the old libs the Jws2 client is working. Compile with Java...
Ben Soares [Mon, 15 Apr 2019 16:26:30 +0000 (17:26 +0100)]
JAL-3130 Somewhere in the old libs the Jws2 client is working.  Compile with Java 11 in Java 1.8 target mode, and then run in Java1.8 JRE with 'java -cp "j8lib/*:classes" jalview.bin.Jalview'.  Will need to find out which of these is actually needed

5 years agoJAL-3130 Helper classes to take Class Exceptions when run in java 1.8 JRE out of...
Ben Soares [Mon, 15 Apr 2019 16:24:38 +0000 (17:24 +0100)]
JAL-3130 Helper classes to take Class Exceptions when run in java 1.8 JRE out of main classes

5 years agoJAL-3130 some clover fixes for helplinks. Use 'gradle test -Pclover=true'
Ben Soares [Mon, 15 Apr 2019 16:17:09 +0000 (17:17 +0100)]
JAL-3130 some clover fixes for helplinks. Use 'gradle test -Pclover=true'

5 years agoJAL-3130 adapted getdown src. attempt 2. first attempt failed due to cp'ed .git files
Ben Soares [Mon, 15 Apr 2019 09:25:36 +0000 (10:25 +0100)]
JAL-3130 adapted getdown src. attempt 2. first attempt failed due to cp'ed .git files

5 years agoJAL-3130 write clover.xml during cloverReport phase
Jim Procter [Sun, 14 Apr 2019 20:22:45 +0000 (21:22 +0100)]
JAL-3130 write clover.xml during cloverReport phase

5 years agoJAL-3130 make sure testng-results.xml is generated
Jim Procter [Sun, 14 Apr 2019 10:48:05 +0000 (11:48 +0100)]
JAL-3130 make sure testng-results.xml is generated

5 years agoJAL-3130 specify module list when launching new Jalview for CLI tests
Jim Procter [Fri, 12 Apr 2019 16:36:22 +0000 (17:36 +0100)]
JAL-3130 specify module list when launching new Jalview for CLI tests

5 years agoJAL-3130 instrument main and compile separately to test classes so Clover doesn’t...
Jim Procter [Fri, 12 Apr 2019 16:35:32 +0000 (17:35 +0100)]
JAL-3130 instrument main and compile separately to test classes so Clover doesn’t misclassify them

5 years agoJAL-3130 gradle test now runs open clover 4.3.1 and new cloverReport task
Jim Procter [Fri, 12 Apr 2019 15:06:54 +0000 (16:06 +0100)]
JAL-3130 gradle test now runs open clover 4.3.1 and new cloverReport task

5 years agoMerge branch 'develop' into task/JAL-3130_Java_11_investigations-getdown_src
Jim Procter [Thu, 11 Apr 2019 13:52:20 +0000 (14:52 +0100)]
Merge branch 'develop' into task/JAL-3130_Java_11_investigations-getdown_src

5 years agoJAL-3130 ensure J11 libs/modules are added when building and running test suite
Jim Procter [Thu, 11 Apr 2019 13:37:58 +0000 (14:37 +0100)]
JAL-3130 ensure J11 libs/modules are added when building and running test suite

5 years agoJAL-3130 clean up eclipse class path for dependencies moved to j11lib
Jim Procter [Thu, 11 Apr 2019 13:37:08 +0000 (14:37 +0100)]
JAL-3130 clean up eclipse class path for dependencies moved to j11lib

5 years agoJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
gmungoc [Wed, 10 Apr 2019 20:35:10 +0000 (21:35 +0100)]
JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org

5 years agoJAL-3018 REST version updated to 10.0
gmungoc [Wed, 10 Apr 2019 20:20:22 +0000 (21:20 +0100)]
JAL-3018 REST version updated to 10.0

5 years agoJAL-3130 adapted getdown src
Ben Soares [Fri, 5 Apr 2019 17:01:18 +0000 (18:01 +0100)]
JAL-3130 adapted getdown src

5 years agoJAL-3130 This commit concentrates on the Mac OS X DMG app bundle, ensuring only one...
Ben Soares [Fri, 5 Apr 2019 16:19:07 +0000 (17:19 +0100)]
JAL-3130 This commit concentrates on the Mac OS X DMG app bundle, ensuring only one JRE needed in the .app bundle for 1) install4j, 2) getdown, 3) jalview

5 years agoJAL-3130 trying to be Java 1.8 source compatible -- not sure if this is ultimately...
Ben Soares [Thu, 4 Apr 2019 10:10:01 +0000 (11:10 +0100)]
JAL-3130 trying to be Java 1.8 source compatible -- not sure if this is ultimately feasible in the same .java files

5 years agoJAL-3130 JAL-3007 more files needed for getdown launcher
Ben Soares [Thu, 4 Apr 2019 10:09:04 +0000 (11:09 +0100)]
JAL-3130 JAL-3007 more files needed for getdown launcher

5 years agoJAL-3130 JAL-3007 improvements to gradle build
Ben Soares [Thu, 4 Apr 2019 10:08:07 +0000 (11:08 +0100)]
JAL-3130 JAL-3007 improvements to gradle build

5 years agoJAL-3021 show Sequence Details with cursor at top
gmungoc [Wed, 3 Apr 2019 15:43:19 +0000 (16:43 +0100)]
JAL-3021 show Sequence Details with cursor at top

5 years agoJAL-3130 JAL-3007 Added gradle build for Java 11. Now in root jalview dir
Ben Soares [Mon, 1 Apr 2019 16:04:56 +0000 (17:04 +0100)]
JAL-3130 JAL-3007 Added gradle build for Java 11. Now in root jalview dir

5 years agoJAL-3130 JAL-3007 Added gradle build for Java 11 and additional taskbar icon change...
Ben Soares [Mon, 1 Apr 2019 08:53:21 +0000 (09:53 +0100)]
JAL-3130 JAL-3007 Added gradle build for Java 11 and additional taskbar icon change in jalview.bin.Jalview

5 years agoJAL-3140 InstallAnywhere updated to intervalstore-v1.0.jar
gmungoc [Fri, 29 Mar 2019 11:05:29 +0000 (11:05 +0000)]
JAL-3140 InstallAnywhere updated to intervalstore-v1.0.jar

5 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Fri, 29 Mar 2019 10:31:02 +0000 (10:31 +0000)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

5 years agoJAL-3140 intervalstore now v1.0 (public release)
gmungoc [Fri, 29 Mar 2019 10:30:51 +0000 (10:30 +0000)]
JAL-3140 intervalstore now v1.0 (public release)

5 years agoJAL-3111 Disable the pubapplet target in build.xml so cruisecontrol build can complete
Jim Procter [Fri, 29 Mar 2019 09:54:49 +0000 (09:54 +0000)]
JAL-3111 Disable the pubapplet target in build.xml so cruisecontrol build can complete

5 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Thu, 28 Mar 2019 17:34:20 +0000 (17:34 +0000)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

5 years agoJAL-3111 biojava dependencies
Jim Procter [Thu, 28 Mar 2019 17:34:11 +0000 (17:34 +0000)]
JAL-3111 biojava dependencies

5 years agoJAL-3111 fix libquagua dependency paths - needs to be checked on OSX InstallAnywhere
Jim Procter [Thu, 28 Mar 2019 17:20:31 +0000 (17:20 +0000)]
JAL-3111 fix libquagua dependency paths - needs to be checked on OSX InstallAnywhere

5 years agoJAL-3111 fix jabaws dependency name in IA config
Jim Procter [Thu, 28 Mar 2019 17:20:04 +0000 (17:20 +0000)]
JAL-3111 fix jabaws dependency name in IA config

5 years agoJAL-3111 intervalstore library on IA classpath
Jim Procter [Thu, 28 Mar 2019 16:59:51 +0000 (16:59 +0000)]
JAL-3111 intervalstore library on IA classpath

5 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Thu, 28 Mar 2019 16:13:39 +0000 (16:13 +0000)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

5 years agoJAL-3111 typo in IA config
Jim Procter [Thu, 28 Mar 2019 15:55:08 +0000 (15:55 +0000)]
JAL-3111 typo in IA config

5 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Thu, 28 Mar 2019 15:52:34 +0000 (15:52 +0000)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

5 years agoJAL-1889 patch for failing isControDown test on build server
gmungoc [Thu, 28 Mar 2019 15:52:23 +0000 (15:52 +0000)]
JAL-1889 patch for failing isControDown test on build server

5 years agoJAL-3111 update InstallAnywhere dependencies for changed libraries
Jim Procter [Thu, 28 Mar 2019 15:40:20 +0000 (15:40 +0000)]
JAL-3111 update InstallAnywhere dependencies for changed libraries

5 years agoMerge branch 'feature/JAL-3181linkOrdering' into develop
gmungoc [Thu, 28 Mar 2019 07:56:40 +0000 (07:56 +0000)]
Merge branch 'feature/JAL-3181linkOrdering' into develop

5 years agoJAL-2620 improved error reporting on failure to load resource files
gmungoc [Wed, 27 Mar 2019 17:06:12 +0000 (17:06 +0000)]
JAL-2620 improved error reporting on failure to load resource files

5 years agoJAL-2717 adjusted code so default correctly returned if i18n fails
gmungoc [Mon, 25 Mar 2019 16:21:42 +0000 (16:21 +0000)]
JAL-2717 adjusted code so default correctly returned if i18n fails

5 years agoJAL-3127 scripts updated for method signature change
gmungoc [Mon, 25 Mar 2019 08:57:56 +0000 (08:57 +0000)]
JAL-3127 scripts updated for method signature change

5 years agoJAL-1889 explicit recalc of geometry for scale left/right/above on/off bug/JAL-1889serverTestSuite
gmungoc [Sat, 23 Mar 2019 08:49:52 +0000 (08:49 +0000)]
JAL-1889 explicit recalc of geometry for scale left/right/above on/off

5 years agoJAL-1889 remove debug logging, add updateLayout()
gmungoc [Sat, 23 Mar 2019 06:40:38 +0000 (06:40 +0000)]
JAL-1889 remove debug logging, add updateLayout()

5 years agoJAL-3130 adding two more modules picked up by gradle building -- not sure why these...
Ben Soares [Fri, 22 Mar 2019 16:23:33 +0000 (16:23 +0000)]
JAL-3130 adding two more modules picked up by gradle building -- not sure why these hadn't been missed before by ant

5 years agoJAL-3130 mark some deprecated methods in Regex as @Deprecated to stop warnings
Ben Soares [Fri, 22 Mar 2019 16:22:45 +0000 (16:22 +0000)]
JAL-3130 mark some deprecated methods in Regex as @Deprecated to stop warnings

5 years agoJAL-1889 more debug logging
gmungoc [Fri, 22 Mar 2019 14:38:08 +0000 (14:38 +0000)]
JAL-1889 more debug logging

5 years agoJAL-1889 better debug logging
gmungoc [Thu, 21 Mar 2019 16:28:40 +0000 (16:28 +0000)]
JAL-1889 better debug logging

5 years agoJAL-1889 temporary debug in findColumn()
gmungoc [Thu, 21 Mar 2019 15:59:39 +0000 (15:59 +0000)]
JAL-1889 temporary debug in findColumn()

5 years agoJAL-1889 added belt and braces deleteOnExit() to test output file
gmungoc [Thu, 21 Mar 2019 15:44:48 +0000 (15:44 +0000)]
JAL-1889 added belt and braces deleteOnExit() to test output file

5 years agoJAL-1889 correct props param, remove dasserver, output file paths
gmungoc [Thu, 21 Mar 2019 15:33:51 +0000 (15:33 +0000)]
JAL-1889 correct props param, remove dasserver, output file paths

5 years agoJAL-3130 Replaced deprecated Class.newInstance() with Class.getDeclaredConstructor...
Ben Soares [Thu, 21 Mar 2019 15:31:15 +0000 (15:31 +0000)]
JAL-3130 Replaced deprecated Class.newInstance() with Class.getDeclaredConstructor().newInstance(). Some eclipse fixes have appeared too.

5 years agoJAL-1889 more diagnostics for CommandLineOperations
gmungoc [Thu, 21 Mar 2019 13:26:14 +0000 (13:26 +0000)]
JAL-1889 more diagnostics for CommandLineOperations

5 years agoJAL-1889 diagnostics for failing test on server
gmungoc [Thu, 21 Mar 2019 10:12:06 +0000 (10:12 +0000)]
JAL-1889 diagnostics for failing test on server

5 years agoJAL-3130 Lots of deprecation fixes. See utils/deprecation_auto_fixes.sh for commands...
Ben Soares [Wed, 20 Mar 2019 16:13:14 +0000 (16:13 +0000)]
JAL-3130 Lots of deprecation fixes.  See utils/deprecation_auto_fixes.sh for commands used to fix the bulk of these (a couple of manual fixes at the end too).

5 years agoJAL-3093 fine tuning of SeqPanel tooltip
gmungoc [Wed, 20 Mar 2019 14:35:34 +0000 (14:35 +0000)]
JAL-3093 fine tuning of SeqPanel tooltip

5 years agoJAL-3212 unit test and fix for Scale Panel bug
gmungoc [Wed, 20 Mar 2019 12:25:31 +0000 (12:25 +0000)]
JAL-3212 unit test and fix for Scale Panel bug

5 years agoJAL-3130 remove some comments on quit. fix modules file.
Ben Soares [Tue, 19 Mar 2019 16:02:11 +0000 (16:02 +0000)]
JAL-3130 remove some comments on quit.  fix modules file.

5 years agoJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben-2 and updated develop
Ben Soares [Tue, 19 Mar 2019 14:58:52 +0000 (14:58 +0000)]
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben-2 and updated develop

5 years agoJAL-3130 removing no longer needed JRE (going to use adoptopenjdk jre11)
Ben Soares [Mon, 18 Mar 2019 16:53:02 +0000 (16:53 +0000)]
JAL-3130 removing no longer needed JRE (going to use adoptopenjdk jre11)

5 years agoJAL-3130 Removing accidentally committed tmp dir
Ben Soares [Mon, 18 Mar 2019 16:50:09 +0000 (16:50 +0000)]
JAL-3130 Removing accidentally committed tmp dir

5 years agoJAL-2964 missed branch for restore link tree to all views
gmungoc [Fri, 15 Mar 2019 14:57:54 +0000 (14:57 +0000)]
JAL-2964 missed branch for restore link tree to all views

5 years agoJAL-3203 Overview show hidden default false also in Preferences
gmungoc [Fri, 15 Mar 2019 14:17:44 +0000 (14:17 +0000)]
JAL-3203 Overview show hidden default false also in Preferences

5 years agoJAL-1270 missing 'alwaysRun=true' added to setup/teardown
gmungoc [Tue, 12 Mar 2019 09:04:21 +0000 (09:04 +0000)]
JAL-1270 missing 'alwaysRun=true' added to setup/teardown

5 years agoMerge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127
gmungoc [Tue, 12 Mar 2019 08:18:42 +0000 (08:18 +0000)]
Merge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127

5 years agoJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading
gmungoc [Tue, 12 Mar 2019 08:18:07 +0000 (08:18 +0000)]
JAL-3127 check for null viewport

5 years agoMerge branch 'develop' into merge/JAL-3127
gmungoc [Mon, 11 Mar 2019 16:32:45 +0000 (16:32 +0000)]
Merge branch 'develop' into merge/JAL-3127

5 years agoJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test AfterMethod!
gmungoc [Mon, 11 Mar 2019 16:30:12 +0000 (16:30 +0000)]
JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test AfterMethod!

5 years agoJAL-3127 fix faulty merge
gmungoc [Mon, 11 Mar 2019 15:36:36 +0000 (15:36 +0000)]
JAL-3127 fix faulty merge

5 years agoMerge branch 'develop' into merge/JAL-3127
gmungoc [Mon, 11 Mar 2019 15:07:39 +0000 (15:07 +0000)]
Merge branch 'develop' into merge/JAL-3127

Conflicts:
src/jalview/viewmodel/AlignmentViewport.java

5 years agoMerge branch 'feature/JAL-2250colourAllGroups' into develop
gmungoc [Mon, 11 Mar 2019 15:04:23 +0000 (15:04 +0000)]
Merge branch 'feature/JAL-2250colourAllGroups' into develop

5 years agoJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups
gmungoc [Mon, 11 Mar 2019 14:54:26 +0000 (14:54 +0000)]
JAL-3201 restore group colours correctly from project

5 years agoMerge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127
gmungoc [Mon, 11 Mar 2019 11:37:58 +0000 (11:37 +0000)]
Merge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127

Conflicts:
src/jalview/gui/Jalview2XML.java
src/jalview/gui/Jalview2XML_V1.java
test/jalview/io/Jalview2xmlTests.java

5 years agoJAL-3206 strict above/below threshold test restored
gmungoc [Mon, 11 Mar 2019 08:50:41 +0000 (08:50 +0000)]
JAL-3206 strict above/below threshold test restored

5 years agoMerge branch 'bug/JAL-3075' into develop
gmungoc [Mon, 11 Mar 2019 08:45:18 +0000 (08:45 +0000)]
Merge branch 'bug/JAL-3075' into develop

5 years agoJAL-3193 defensive trim of URL read from properties file
gmungoc [Fri, 8 Mar 2019 14:37:26 +0000 (14:37 +0000)]
JAL-3193 defensive trim of URL read from properties file

5 years agoJAL-2903 typos fixed
gmungoc [Fri, 8 Mar 2019 11:55:15 +0000 (11:55 +0000)]
JAL-2903 typos fixed

5 years agoJAL-3075 update column selection on mouse up after scroll bug/JAL-3075
gmungoc [Fri, 8 Mar 2019 11:26:52 +0000 (11:26 +0000)]
JAL-3075 update column selection on mouse up after scroll

5 years agoMerge branch 'feature/JAL-3180colourAnnotationMenu' into merge/JAL-3180
gmungoc [Thu, 7 Mar 2019 16:12:25 +0000 (16:12 +0000)]
Merge branch 'feature/JAL-3180colourAnnotationMenu' into merge/JAL-3180

Conflicts:
resources/lang/Messages.properties
resources/lang/Messages_es.properties

5 years agoJAL-3130 deprecation change preparation
Ben Soares [Thu, 7 Mar 2019 15:29:38 +0000 (15:29 +0000)]
JAL-3130 deprecation change preparation

5 years agoJAL-2250 default Apply Colour to All Groups selected
gmungoc [Thu, 7 Mar 2019 15:08:15 +0000 (15:08 +0000)]
JAL-2250  default Apply Colour to All Groups selected

5 years agoJAL-3127 set ‘updateStructures’ flag for viewports associated with each tree to true...
Jim Procter [Thu, 7 Mar 2019 14:25:41 +0000 (14:25 +0000)]
JAL-3127 set ‘updateStructures’ flag for viewports associated with each tree to true when groups are deleted, rather then when we create new groups (which may not always be the case).

5 years agoJAL-2717 JAL-2360 belated unit tests for ColourMenuHelper
gmungoc [Thu, 7 Mar 2019 12:57:28 +0000 (12:57 +0000)]
JAL-2717 JAL-2360 belated unit tests for ColourMenuHelper

5 years agoJAL-2717 corrected i18n of colour scheme names
gmungoc [Tue, 21 Aug 2018 12:59:37 +0000 (13:59 +0100)]
JAL-2717 corrected i18n of colour scheme names

5 years agoMerge branch 'feature/JAL-3205symmetricCalc' into develop
gmungoc [Thu, 7 Mar 2019 09:14:33 +0000 (09:14 +0000)]
Merge branch 'feature/JAL-3205symmetricCalc' into develop

5 years agoJAL-3035 removed spring libraries as only used for jdas
gmungoc [Thu, 7 Mar 2019 08:43:44 +0000 (08:43 +0000)]
JAL-3035 removed spring libraries as only used for jdas

5 years agoMerge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop
gmungoc [Wed, 6 Mar 2019 16:01:34 +0000 (16:01 +0000)]
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop

5 years agoJAL-3035 restored erroneous deletion tasks/JAL-3035_remove_dasobert_dependency
gmungoc [Wed, 6 Mar 2019 16:01:12 +0000 (16:01 +0000)]
JAL-3035 restored erroneous deletion

5 years agoMerge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop
gmungoc [Wed, 6 Mar 2019 15:50:20 +0000 (15:50 +0000)]
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop

5 years agoJAL-3035 more das bits removed
gmungoc [Wed, 6 Mar 2019 15:49:46 +0000 (15:49 +0000)]
JAL-3035 more das bits removed

5 years agoMerge branch 'bug/JAL-3201groupClustal' into develop
gmungoc [Tue, 5 Mar 2019 17:57:54 +0000 (17:57 +0000)]
Merge branch 'bug/JAL-3201groupClustal' into develop

5 years agoMerge remote-tracking branch 'origin/features/JAL-2620alternativeCodeTables' into...
gmungoc [Tue, 5 Mar 2019 16:44:20 +0000 (16:44 +0000)]
Merge remote-tracking branch 'origin/features/JAL-2620alternativeCodeTables' into merge/JAL-2620

5 years agoMerge branch 'bug/JAL-2621' into develop
gmungoc [Tue, 5 Mar 2019 15:22:40 +0000 (15:22 +0000)]
Merge branch 'bug/JAL-2621' into develop

Conflicts:
src/jalview/gui/OverviewPanel.java