jalview.git
3 years agoJAL-3851 re-engineering endpoints as separate classes
Ben Soares [Thu, 2 Sep 2021 13:26:01 +0000 (14:26 +0100)]
JAL-3851 re-engineering endpoints as separate classes

3 years agoJAL-3851 run the eclipse compiled jalview
Ben Soares [Thu, 2 Sep 2021 13:25:36 +0000 (14:25 +0100)]
JAL-3851 run the eclipse compiled jalview

3 years agoJAL-3851 API handling of rest calls
Ben Soares [Thu, 2 Sep 2021 13:25:15 +0000 (14:25 +0100)]
JAL-3851 API handling of rest calls

3 years agoJAL-3851 convenience methods for logging exceptions
Ben Soares [Thu, 2 Sep 2021 13:22:18 +0000 (14:22 +0100)]
JAL-3851 convenience methods for logging exceptions

3 years agoJAL-3850 fixed full class name
Ben Soares [Wed, 21 Jul 2021 11:50:15 +0000 (12:50 +0100)]
JAL-3850 fixed full class name

3 years agoJAL-3850 using reflection for SimpleHttpFileServerFactory
Ben Soares [Wed, 21 Jul 2021 11:32:31 +0000 (12:32 +0100)]
JAL-3850 using reflection for SimpleHttpFileServerFactory

3 years agoJAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license...
Ben Soares [Fri, 18 Jun 2021 14:29:59 +0000 (15:29 +0100)]
JAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license free photo

3 years agoJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2
Jim Procter [Wed, 9 Jun 2021 15:53:09 +0000 (16:53 +0100)]
JAL-3840 don’t update the modal residue count for gaps

3 years agofixes JAL-3840
Jim Procter [Wed, 9 Jun 2021 15:40:42 +0000 (16:40 +0100)]
fixes JAL-3840

3 years agoJAL-3840 failing test - show that addGaps overflows
Jim Procter [Wed, 9 Jun 2021 15:35:11 +0000 (16:35 +0100)]
JAL-3840 failing test - show that addGaps overflows

3 years agoMerge branch 'develop' into improvement/JAL-3830_macOS_bundle_wrapper
Ben Soares [Tue, 8 Jun 2021 16:11:56 +0000 (17:11 +0100)]
Merge branch 'develop' into improvement/JAL-3830_macOS_bundle_wrapper

3 years agoJAL-3248 Moved old README to doc/old_README and put pointers in new README for deskop...
Ben Soares [Mon, 26 Apr 2021 19:00:40 +0000 (20:00 +0100)]
JAL-3248 Moved old README to doc/old_README and put pointers in new README for deskopt application building and JalviewJS building

3 years agoJAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsT...
Ben Soares [Mon, 26 Apr 2021 16:56:19 +0000 (17:56 +0100)]
JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

3 years agoJAL-3833 Allow setHiDPI and setHiDPIScale to work more usefully in real life
Ben Soares [Thu, 22 Apr 2021 14:20:41 +0000 (15:20 +0100)]
JAL-3833 Allow setHiDPI and setHiDPIScale to work more usefully in real life

3 years agoJAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect...
Ben Soares [Sun, 18 Apr 2021 19:31:07 +0000 (20:31 +0100)]
JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

3 years agoJAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give...
Ben Soares [Tue, 13 Apr 2021 16:40:10 +0000 (17:40 +0100)]
JAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give better messages to the user

3 years agoJAL-3830 BAT file wrapper around powershell, so jalview works in command prompt....
Ben Soares [Wed, 31 Mar 2021 22:16:56 +0000 (23:16 +0100)]
JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

3 years agoJAL-3830 Follow all SymbolicLinks in Windows powershell wrapper
Ben Soares [Tue, 30 Mar 2021 00:43:52 +0000 (01:43 +0100)]
JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

3 years agoJAL-3830 delete channel.props and channel.propsv when uninstalling
Ben Soares [Fri, 26 Mar 2021 17:30:18 +0000 (17:30 +0000)]
JAL-3830 delete channel.props and channel.propsv when uninstalling

3 years agoJAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j...
Ben Soares [Wed, 24 Mar 2021 01:49:24 +0000 (01:49 +0000)]
JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

3 years agoJAL-3830 Allow paths to start with '~'. Make path check more succinct.
Ben Soares [Wed, 17 Mar 2021 23:15:11 +0000 (23:15 +0000)]
JAL-3830 Allow paths to start with '~'. Make path check more succinct.

3 years agoJAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos...
Ben Soares [Wed, 17 Mar 2021 21:06:11 +0000 (21:06 +0000)]
JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

3 years agoJAL-3830 add the windows bash script to getdown files and install4j installers
Ben Soares [Wed, 17 Mar 2021 00:30:55 +0000 (00:30 +0000)]
JAL-3830 add the windows bash script to getdown files and install4j installers

3 years agoJAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)
Ben Soares [Wed, 17 Mar 2021 00:22:00 +0000 (00:22 +0000)]
JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

3 years agoJAL-3830 Delete wrapper scripts and getdown *v files when uninstalling
Ben Soares [Mon, 15 Mar 2021 16:56:52 +0000 (16:56 +0000)]
JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

3 years agoJAL-3830 powershell wrapper tested on linux, macos and windows including spaces in...
Ben Soares [Mon, 15 Mar 2021 15:21:53 +0000 (15:21 +0000)]
JAL-3830 powershell wrapper tested on linux, macos and windows including spaces in paths.  This is the way.

3 years agoJAL-3830 minor fix in powershell wrapper
Ben Soares [Sun, 14 Mar 2021 01:29:58 +0000 (01:29 +0000)]
JAL-3830 minor fix in powershell wrapper

3 years agoJAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux
Ben Soares [Sun, 14 Mar 2021 01:27:43 +0000 (01:27 +0000)]
JAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux

3 years agoJAL-3830 Powershell wrapper now works cross-platform. Who needs bash?!
Ben Soares [Sun, 14 Mar 2021 00:28:19 +0000 (00:28 +0000)]
JAL-3830 Powershell wrapper now works cross-platform.  Who needs bash?!

3 years agoJAL-3830 Make wrapper scripts executable
Ben Soares [Sun, 14 Mar 2021 00:27:32 +0000 (00:27 +0000)]
JAL-3830 Make wrapper scripts executable

3 years agoJAL-3830 powershell wrapper tested and fixed
Ben Soares [Fri, 12 Mar 2021 20:41:33 +0000 (20:41 +0000)]
JAL-3830 powershell wrapper tested and fixed

3 years agoJAL-3830 improved bash scripts. Added powershell script. Needs testing
Ben Soares [Fri, 12 Mar 2021 18:26:29 +0000 (18:26 +0000)]
JAL-3830 improved bash scripts. Added powershell script. Needs testing

3 years agoJAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS...
Ben Soares [Fri, 12 Mar 2021 01:09:56 +0000 (01:09 +0000)]
JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

3 years agoJAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac...
Ben Soares [Thu, 11 Mar 2021 18:05:26 +0000 (18:05 +0000)]
JAL-3830 Improved for .app dir name with spaces, e.g. Jalview Local. Tested on mac to be working.

3 years agoJAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need...
Ben Soares [Wed, 10 Mar 2021 19:58:48 +0000 (19:58 +0000)]
JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

3 years agoJAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS...
Ben Soares [Wed, 10 Mar 2021 19:50:34 +0000 (19:50 +0000)]
JAL-3830 first draft of wrapper script to go in macOS Jalview.app/Contents/MacOS/jalview

3 years agoMerge branch 'task/JAL-3796_notarization' into develop
Jalview Development Admin [Fri, 5 Mar 2021 17:18:47 +0000 (17:18 +0000)]
Merge branch 'task/JAL-3796_notarization' into develop

3 years agoMerge branch 'develop' into task/JAL-3796_notarization
Jalview Development Admin [Fri, 5 Mar 2021 17:18:14 +0000 (17:18 +0000)]
Merge branch 'develop' into task/JAL-3796_notarization

3 years agoJAL-3796 minimal steps for notarization and the entitlements.txt file needed for...
Jalview Development Admin [Fri, 5 Mar 2021 17:07:59 +0000 (17:07 +0000)]
JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

3 years agoJAL-3618 Enable appBundleIsTraversable in JFileChooser on macOS
Ben Soares [Fri, 5 Mar 2021 11:24:16 +0000 (11:24 +0000)]
JAL-3618 Enable appBundleIsTraversable in JFileChooser on macOS

3 years agoJAL-3594 Allow a channel to use a different preferences file than .jalview_properties...
Ben Soares [Thu, 4 Mar 2021 19:19:34 +0000 (19:19 +0000)]
JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

3 years agoJAL-3822 pass panel height and width to wrapped geometry calculations
gmungoc [Thu, 18 Feb 2021 18:42:42 +0000 (18:42 +0000)]
JAL-3822 pass panel height and width to wrapped geometry calculations

3 years agoJAL-2422 remove temporary patch (requires ChimeraX Daily or 1.2 build)
gmungoc [Thu, 18 Feb 2021 11:43:03 +0000 (11:43 +0000)]
JAL-2422 remove temporary patch (requires ChimeraX Daily or 1.2 build)

3 years agoJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClassName to set the grouped appli...
Ben Soares [Wed, 10 Feb 2021 17:19:31 +0000 (17:19 +0000)]
JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClassName to set the grouped application name in the taskbar

3 years agoJAL-3521 Changed wording of INSTALLATION in source tarball build_properties
Ben Soares [Wed, 10 Feb 2021 00:12:16 +0000 (00:12 +0000)]
JAL-3521 Changed wording of INSTALLATION in source tarball build_properties

3 years agoJAL-3521 Adding a build_properties into sourceDist tarball, with INSTALLATION=SourceD...
Ben Soares [Mon, 8 Feb 2021 19:00:18 +0000 (19:00 +0000)]
JAL-3521 Adding a build_properties into sourceDist tarball, with INSTALLATION=SourceDist git-commit...

3 years agoJAL-2422 updated unit test for ChimeraX command change Develop-2_11_2_0-d20210205
gmungoc [Fri, 5 Feb 2021 09:20:16 +0000 (09:20 +0000)]
JAL-2422 updated unit test for ChimeraX command change

3 years agoJAL-2422 a fix and a fudge for two failing ChimeraX commands
gmungoc [Thu, 4 Feb 2021 17:50:29 +0000 (17:50 +0000)]
JAL-2422 a fix and a fudge for two failing ChimeraX commands

3 years agoMerge branch 'task/JAL-3796_notarization_no_uninstaller' into develop
Jalview Development Admin [Thu, 28 Jan 2021 14:02:33 +0000 (14:02 +0000)]
Merge branch 'task/JAL-3796_notarization_no_uninstaller' into develop

3 years agoMerge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_bran...
Jalview Development Admin [Thu, 28 Jan 2021 13:50:45 +0000 (13:50 +0000)]
Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

3 years agoMerge branch 'develop' into task/JAL-3796_notarization_no_uninstaller
Jalview Development Admin [Thu, 28 Jan 2021 12:46:07 +0000 (12:46 +0000)]
Merge branch 'develop' into task/JAL-3796_notarization_no_uninstaller

3 years agoMerge branch 'develop' into task/JAL-3796_notarization
Jalview Development Admin [Thu, 28 Jan 2021 12:42:56 +0000 (12:42 +0000)]
Merge branch 'develop' into task/JAL-3796_notarization

3 years agoJAL-3521 Updating file opening marker to %u
Ben Soares [Tue, 26 Jan 2021 15:27:19 +0000 (15:27 +0000)]
JAL-3521 Updating file opening marker to %u

3 years agoJAL-3521 Debian mime-type and desktop helper files, and script to create them
Ben Soares [Tue, 26 Jan 2021 13:59:13 +0000 (13:59 +0000)]
JAL-3521 Debian mime-type and desktop helper files, and script to create them

3 years agoJAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/...... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch
Ben Soares [Fri, 22 Jan 2021 13:54:42 +0000 (13:54 +0000)]
JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... .  Removed no longer used DS_Store files from utils/install4j.

3 years agoJAL-3805 New DS_Store for smaller DMG Finder window
Ben Soares [Fri, 22 Jan 2021 11:42:35 +0000 (11:42 +0000)]
JAL-3805 New DS_Store for smaller DMG Finder window

3 years agoJAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch
Ben Soares [Thu, 21 Jan 2021 23:42:42 +0000 (23:42 +0000)]
JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

3 years agoJAL-3038 corrected code that reads editable JComboBox text input
gmungoc [Thu, 21 Jan 2021 17:18:06 +0000 (17:18 +0000)]
JAL-3038 corrected code that reads editable JComboBox text input

3 years agoJAL-3796 update signature for uninstaller on OSX
Jalview Development Admin [Thu, 14 Jan 2021 17:39:31 +0000 (17:39 +0000)]
JAL-3796 update signature for uninstaller on OSX

3 years agoJAL-3796 update to Install4j 8.0.10 and add config for code notarization
Jalview Development Admin [Thu, 14 Jan 2021 15:34:05 +0000 (15:34 +0000)]
JAL-3796 update to Install4j 8.0.10 and add config for code notarization

3 years agoJAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalvi...
Ben Soares [Mon, 11 Jan 2021 21:30:56 +0000 (21:30 +0000)]
JAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalviewjs/config/j2s settings file when running a headless build in gradle

3 years agoJAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty
Ben Soares [Mon, 11 Jan 2021 21:28:56 +0000 (21:28 +0000)]
JAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty

3 years agoJAL-3280 Fixed the version checking URL formulation (getdown build_properties) for... Develop-2_11_2_0-d20201215
Ben Soares [Mon, 14 Dec 2020 23:18:04 +0000 (23:18 +0000)]
JAL-3280 Fixed the version checking URL formulation (getdown build_properties) for jalviewjs, can also use it for jalviewjs in future

3 years agoJAL-3783 Reverting to using groovy-all-2.4.12-indy.jar to fix serious problem with...
Ben Soares [Mon, 14 Dec 2020 17:56:17 +0000 (17:56 +0000)]
JAL-3783 Reverting to using groovy-all-2.4.12-indy.jar to fix serious problem with Groovy console using shadowJar

3 years agoJAL-3628 Test for doubly saved single backup file scheme
Ben Soares [Mon, 14 Dec 2020 17:24:03 +0000 (17:24 +0000)]
JAL-3628 Test for doubly saved single backup file scheme

3 years agoJAL-3594 Allow setting of getdownappbase and getdowndistdir properties for DEVELOP...
Ben Soares [Mon, 14 Dec 2020 16:12:59 +0000 (16:12 +0000)]
JAL-3594 Allow setting of getdownappbase and getdowndistdir properties for DEVELOP channel, and change DEVELOP version to be VERSION-dDATE instead of VERSION-develop.  dDATE will help users know when Jalview Develop applicaiton updated

3 years agoJAL-3280 Test for remote release build_properties file version check
Ben Soares [Wed, 2 Sep 2020 17:25:40 +0000 (18:25 +0100)]
JAL-3280 Test for remote release build_properties file version check

3 years agoJAL-3280 fixes after CR-JAL-241. Now only checking release build_properties.
Ben Soares [Tue, 1 Sep 2020 16:45:21 +0000 (17:45 +0100)]
JAL-3280 fixes after CR-JAL-241. Now only checking release build_properties.

3 years agoJAL-3280 Pass appbase and appdir from getdown to jalvew. Check appbase (defaults...
Ben Soares [Mon, 31 Aug 2020 17:38:15 +0000 (18:38 +0100)]
JAL-3280 Pass appbase and appdir from getdown to jalvew. Check appbase (defaults to release appbase) for build_properties VERSION insteadl of jnlp file.

3 years agoJAL-3594 Defintely want SplashScreen to appear in the Desktop window otherwise it...
Ben Soares [Fri, 11 Dec 2020 20:27:19 +0000 (20:27 +0000)]
JAL-3594 Defintely want SplashScreen to appear in the Desktop window otherwise it might not be closeable

3 years agoJAL-3594 Changed building.md to describe -PCHANNEL=JALVIEWJS and JALVIEWJS-TEST
Ben Soares [Fri, 11 Dec 2020 17:19:16 +0000 (17:19 +0000)]
JAL-3594 Changed building.md to describe -PCHANNEL=JALVIEWJS and JALVIEWJS-TEST

3 years agoJAL-3594 Changed building.md to reflect change of name of channel_properties to chann...
Ben Soares [Fri, 11 Dec 2020 17:14:26 +0000 (17:14 +0000)]
JAL-3594 Changed building.md to reflect change of name of channel_properties to channel.props

3 years agoJAL-3594 Adjustments to allow JalviewJS to use ChannelProperties, and new utils/chann...
Ben Soares [Fri, 11 Dec 2020 17:02:36 +0000 (17:02 +0000)]
JAL-3594 Adjustments to allow JalviewJS to use ChannelProperties, and new utils/channels dir for jalviewjs and jalviewjs-release

3 years agoJAL-3775 JAL-3633 Make java.net.Authenticator code conditional on not being JalviewJS
Ben Soares [Fri, 11 Dec 2020 16:34:53 +0000 (16:34 +0000)]
JAL-3775 JAL-3633 Make java.net.Authenticator code conditional on not being JalviewJS

3 years agoMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop
Ben Soares [Thu, 10 Dec 2020 19:56:14 +0000 (19:56 +0000)]
Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop

3 years agoJAL-3594 Better Jalview Develop banner
Ben Soares [Thu, 10 Dec 2020 19:53:55 +0000 (19:53 +0000)]
JAL-3594 Better Jalview Develop banner

3 years agoJAL-3594 Documentation added to building.md for using the utils/channels/... folders
Ben Soares [Thu, 10 Dec 2020 10:49:44 +0000 (10:49 +0000)]
JAL-3594 Documentation added to building.md for using the utils/channels/... folders

3 years agoMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop
Ben Soares [Thu, 10 Dec 2020 10:05:25 +0000 (10:05 +0000)]
Merge branch 'task/JAL-3594_updated--CHANNEL_cosmetics' into develop

3 years agoMerge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609...
Ben Soares [Thu, 10 Dec 2020 09:56:09 +0000 (09:56 +0000)]
Merge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch' into develop

3 years agoJAL-3594 Improved About banners for develop and test-release
Ben Soares [Wed, 9 Dec 2020 20:21:03 +0000 (20:21 +0000)]
JAL-3594 Improved About banners for develop and test-release

3 years agoJAL-3594 Images for splash screen
Ben Soares [Wed, 9 Dec 2020 18:23:02 +0000 (18:23 +0000)]
JAL-3594 Images for splash screen

3 years agoJAL-3594 JAL-3728 Added taskbar icons to desktop and Java console. Changed "Jalview...
Ben Soares [Wed, 9 Dec 2020 13:57:08 +0000 (13:57 +0000)]
JAL-3594 JAL-3728 Added taskbar icons to desktop and Java console. Changed "Jalview" to "app_name" in various appropriate places

3 years agoMerge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609...
Ben Soares [Tue, 8 Dec 2020 20:42:31 +0000 (20:42 +0000)]
Merge branch 'merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch' into merge/JAL-3594_and_new_develop_issues

3 years agoJAL-3594 Change main window title
Ben Soares [Tue, 8 Dec 2020 18:17:35 +0000 (18:17 +0000)]
JAL-3594 Change main window title

3 years agoJAL-3594 DMG fixes
Ben Soares [Tue, 8 Dec 2020 00:56:02 +0000 (00:56 +0000)]
JAL-3594 DMG fixes

3 years agoJAL-3594 added BG logo. Changed some named Jalviews to app_name property. Added test...
Ben Soares [Mon, 7 Dec 2020 21:22:01 +0000 (21:22 +0000)]
JAL-3594 added BG logo. Changed some named Jalviews to app_name property. Added test-release and default channels.

3 years agoJAL-3754 Fixed jar task creating strange dir because of outputs.file()
Ben Soares [Mon, 7 Dec 2020 13:29:39 +0000 (13:29 +0000)]
JAL-3754 Fixed jar task creating strange dir because of outputs.file()

3 years agoJAL-3754 Fixed jar task creating strange dir because of outputs.file()
Ben Soares [Mon, 7 Dec 2020 13:29:39 +0000 (13:29 +0000)]
JAL-3754 Fixed jar task creating strange dir because of outputs.file()

3 years agoJAL-3594 Default values for channel properties defined in code as fallback
Ben Soares [Sat, 5 Dec 2020 21:17:33 +0000 (21:17 +0000)]
JAL-3594 Default values for channel properties defined in code as fallback

3 years agoJAL-3594 Added rotating logo png
Ben Soares [Fri, 4 Dec 2020 18:52:37 +0000 (18:52 +0000)]
JAL-3594 Added rotating logo png

3 years agoJAL-3754 fixed a problem with jar task creating a stray dir when building
Ben Soares [Fri, 4 Dec 2020 18:31:32 +0000 (18:31 +0000)]
JAL-3754 fixed a problem with jar task creating a stray dir when building

3 years agoJAL-3775 added the Platform.isLinux() check for test HiDPISetting2
Ben Soares [Fri, 4 Dec 2020 17:59:13 +0000 (17:59 +0000)]
JAL-3775 added the Platform.isLinux() check for test HiDPISetting2

3 years agoJAL-3594 New jalview.util.ChannelProperties to get/cache values and images used in...
Ben Soares [Fri, 4 Dec 2020 17:16:39 +0000 (17:16 +0000)]
JAL-3594 New jalview.util.ChannelProperties to get/cache values and images used in the application. Starting to tidy images in resources/images.

3 years agoJAL-3594 Generating GIMP XCF files for getdown and new release getdown images
Ben Soares [Fri, 4 Dec 2020 11:09:12 +0000 (11:09 +0000)]
JAL-3594 Generating GIMP XCF files for getdown and new release getdown images

3 years agoJAL-3594 Release images and channel properties
Ben Soares [Fri, 4 Dec 2020 00:56:40 +0000 (00:56 +0000)]
JAL-3594 Release images and channel properties

3 years agoJAL-3594 New way for build.gradle to override properties with channel based propertie...
Ben Soares [Thu, 3 Dec 2020 22:51:23 +0000 (22:51 +0000)]
JAL-3594 New way for build.gradle to override properties with channel based properties files. Starting to tidy up some old image files

3 years agoJAL-3594 new logos, icons and cosmetics for getdown and install4j
Ben Soares [Wed, 2 Dec 2020 14:01:25 +0000 (14:01 +0000)]
JAL-3594 new logos, icons and cosmetics for getdown and install4j

3 years agoJAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL...
Ben Soares [Fri, 18 Sep 2020 11:09:36 +0000 (12:09 +0100)]
JAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL=DEVELOP

3 years agoMerge branch 'develop' into merge/develop_and_rebase_squashed_merge_JAL-3628+JAL...
Ben Soares [Tue, 1 Dec 2020 15:03:56 +0000 (15:03 +0000)]
Merge branch 'develop' into merge/develop_and_rebase_squashed_merge_JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch

3 years agoJAL-3609 JAL-3775 Updated getdown with re-factored HiDPISetting and ScreenInfo. No...
Ben Soares [Tue, 1 Dec 2020 14:57:16 +0000 (14:57 +0000)]
JAL-3609 JAL-3775 Updated getdown with re-factored HiDPISetting and ScreenInfo. No real functionality change.