2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum,
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2016-12-16 |
gmungoc | JAL-1354 use i18n text for expected value
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commit | commitdiff | tree |
2016-12-14 |
gmungoc | JAL-2360 test added
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commit | commitdiff | tree |
2016-12-14 |
gmungoc | JAL-2360 added check for null annotations array
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commit | commitdiff | tree |
2016-12-14 |
gmungoc | JAL-1544 JAL-2360 reformatted help page a bit nicer...
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2016-12-13 |
gmungoc | JAL-2365 test for lightgray, darkgray not lightGray...
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2016-12-13 |
gmungoc | JAL-2360 code formatting only and if-else changed to...
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commit | commitdiff | tree |
2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee...
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commit | commitdiff | tree |
2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu
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commit | commitdiff | tree |
2016-12-12 |
gmungoc | JAL-2360 simplify nucleotide flag, remove setter
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commit | commitdiff | tree |
2016-12-12 |
gmungoc | JAL-2361 use consistent colour names on menus
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commit | commitdiff | tree |
2016-12-12 |
gmungoc | JAL-1544 backgroud -> background
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2016-12-12 |
gmungoc | JAL-2362 return correct lower-case colour; Javadoc...
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commit | commitdiff | tree |
2016-12-12 |
gmungoc | JAL-2632 corrected lookup of residue colour
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commit | commitdiff | tree |
2016-12-09 |
gmungoc | JAL-2105 updated for reviewed REST version 4.8
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commit | commitdiff | tree |
2016-12-09 |
gmungoc | JAL-1895 suppress RNA interaction colour option
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commit | commitdiff | tree |
2016-12-08 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-12-08 |
gmungoc | JAL-2359 add Window menu entry only after all danger...
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commit | commitdiff | tree |
2016-12-07 |
gmungoc | JAL-2356 use cached Sifts file if not expired
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commit | commitdiff | tree |
2016-12-07 |
gmungoc | JAL-2354 handle error response when fetching features
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commit | commitdiff | tree |
2016-12-07 |
gmungoc | JAL-2344 handle null format, simplify JalviewFileChooser...
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2016-12-05 |
gmungoc | JAL-2346 JAL-1553 pull-up / push-down of fields and...
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commit | commitdiff | tree |
2016-12-05 |
gmungoc | JAL-1753 JAL-1596 JAL-1933 ensure AWT updates are on...
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2016-12-05 |
gmungoc | Merge branch 'features/JAL-1933_occupancy' into features...
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2016-12-02 |
gmungoc | Merge branch 'features/JAL-1933_occupancy' into features...
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | JAL-1933 gap value as description; minor formatting
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | JAL-2346 Javadoc correction
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | Unit tests added, minor refactoring
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | JAL-2346 fixed bug (in code not reached by Jalview)
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commit | commitdiff | tree |
2016-12-02 |
gmungoc | JAL-2346 unit test for annotation drop-down list builder
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commit | commitdiff | tree |
2016-12-01 |
gmungoc | JAL-2346 unused method removed
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commit | commitdiff | tree |
2016-12-01 |
gmungoc | JAL-2346 save annotation id instead of label with annotation...
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2016-12-01 |
gmungoc | JAL-2346 restore choice of annotation for colouring...
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commit | commitdiff | tree |
2016-11-30 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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commit | commitdiff | tree |
2016-11-30 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-29 |
gmungoc | JAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-29 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
2016-11-29 |
gmungoc | JAL-2344 corrected conversion of Type enum to FileFormat
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2016-11-29 |
gmungoc | JAL-2344 FileFormat.isStructureFile replaces
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commit | commitdiff | tree |
2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge
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commit | commitdiff | tree |
2016-11-28 |
gmungoc | JAL-2344 added FileFormatI.isStructureFile()
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2016-11-28 |
gmungoc | JAL-2345 cache generated ImageIcon per file path
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2016-11-25 |
gmungoc | JAL-2344 dynamically determine recognised extensions...
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commit | commitdiff | tree |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge
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commit | commitdiff | tree |
2016-11-25 |
gmungoc | JAL-2344 override to ignore (obsolete?) JalviewFileView
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commit | commitdiff | tree |
2016-11-25 |
gmungoc | JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25 |
gmungoc | JAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar...
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2016-11-24 |
gmungoc | Further tweaks to get tests passing
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commit | commitdiff | tree |
2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile
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commit | commitdiff | tree |
2016-11-23 |
gmungoc | JAL-1738 Spanish versions added
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commit | commitdiff | tree |
2016-11-23 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-22 |
gmungoc | JAL-2337 fix: only adjust once for scroll offset
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2016-11-22 |
gmungoc | JAL-1919 JAL-2177 handle empty pdbentries list correctly
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2016-11-22 |
gmungoc | JAL-2277 refactored AlignmentPanel.printUnwrapped to...
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commit | commitdiff | tree |
2016-11-21 |
gmungoc | JAL-2333 test beefed up with gaps
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commit | commitdiff | tree |
2016-11-21 |
gmungoc | JAL-2333 corrected select columns with 'contact' feature
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commit | commitdiff | tree |
2016-11-21 |
gmungoc | Merge branch 'develop' into bug/JAL-2323disulfideOverview
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2016-11-18 |
gmungoc | JAL-98 with the two types missing from last commit...
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2016-11-17 |
gmungoc | JAL-2323 revert to thread-safe iteration over array...
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commit | commitdiff | tree |
2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns
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commit | commitdiff | tree |
2016-11-17 |
gmungoc | JAL-98 javadoc, third party acknowledgements (and very...
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commit | commitdiff | tree |
2016-11-17 |
gmungoc | JAL-2327 disulfide bond abstracted to SequenceFeature...
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commit | commitdiff | tree |
2016-11-17 |
gmungoc | JAL-2327 add isContactFeature
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2296 unit test for reading Chimera attributes to...
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2323 render disulfide bond correctly on overview...
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2324 fix and tests for comparison of Float.NaN...
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2319 corrected reporting of SIFTS mapping
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2296 don't copy attribute with value False
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commit | commitdiff | tree |
2016-11-16 |
gmungoc | JAL-2295 don't exclude RESNUM from transfer to Chimera
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commit | commitdiff | tree |
2016-11-14 |
gmungoc | JAL-2296 new code and refactoring for 'copy Chimera...
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commit | commitdiff | tree |
2016-11-14 |
gmungoc | JAL-2295 don't copy 'Chimera' features back to Chimera
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commit | commitdiff | tree |
2016-11-14 |
gmungoc | JAL-2296 parse Chimera atomspec to AtomSpec
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commit | commitdiff | tree |
2016-11-14 |
gmungoc | JAL-2296 report whether SequenceFeature actually added...
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commit | commitdiff | tree |
2016-11-14 |
gmungoc | JAL-2295 JAL-2296 skeleton 'attributes to features...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimeraAttri...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 tests now 'network-free' with local PDB and...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 improved integrity of 'isFinishedInit' flag
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-1270 corrected command-line args
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 set finishedInit to false before checking...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 test that verifies transfer of features to...
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 sorted properties for readability
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 (optionally) return Chimera command reply
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commit | commitdiff | tree |
2016-11-11 |
gmungoc | JAL-2295 correct test for Float.isNaN(score) !
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commit | commitdiff | tree |
2016-11-10 |
gmungoc | JAL-2295 additional tests, stronger sanitisation of...
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commit | commitdiff | tree |
2016-11-10 |
gmungoc | JAL-2320 thread to close Chimera viewer panel if Chimera...
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commit | commitdiff | tree |
2016-11-10 |
gmungoc | JAL-2320 added getViewer() method to return Chimera...
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commit | commitdiff | tree |
2016-11-09 |
gmungoc | JAL-2295 set attributes commands include feature value...
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commit | commitdiff | tree |
2016-11-09 |
gmungoc | JAL-2295 single constant for "RESNUM" feature name
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commit | commitdiff | tree |
2016-11-08 |
gmungoc | JAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08 |
gmungoc | JAL-2301 corrected search example to match AA properties...
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commit | commitdiff | tree |
2016-11-08 |
gmungoc | JAL-2301 made T hydrophobic as per the cited conservation...
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commit | commitdiff | tree |
2016-11-08 |
gmungoc | JAL-1961 added link to GFF3 format as well as GFF2
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commit | commitdiff | tree |
2016-11-08 |
gmungoc | JAL-2295 feature and colour commands refactored to...
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