| 2011-11-14 |
jprocter | JAL-975 - ensure sequences are padded with gaps before...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws2supp
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-986) rendering to imageMap counts as rendering...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) documentation and tooltips
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) allow different ID margin calculation...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preference widgets for settings
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preferences documentation
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-986) getter for integer user preference properties
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-980) jmol classpath patch
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commit | commitdiff | tree |
| 2011-11-08 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-08 |
jprocter | fix NPE when no annotation workers present ...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-974) - remove sun-internal class and use message...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-976,JAL-975) disorder client menu items and check...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-974,JAL-975) refactor common code for a JABAWS...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-975) formatting
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-975) ensure AACons is only run on protein sequences...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) patch netbeans and installAnywhere builds
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) use proper release number for Jmol libs ...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980,JAL-982) - applet console only allows console...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) update binding for refactored Jmol constants...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) update Jmol library to 12.2.16452 (built...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) JABAWSv2 client for InstallAnywhere build
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | cleanup imports
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | update build notes
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-975) client for amino acid conservation service...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-974,JAL-975) new handler for JABAWS sequence and...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) refactored common code for JABAWS v2 service...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | tidy imports
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-978) discover JABA1 and JABA2 services and generate...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-978) refactored JABAWS2 service handle class to...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) upgrade to jabaws-2.0 min-client library
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-812,JAL-811) - generic test for 'calculation involving...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-811) - workers hold references to generated annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-812) javadoc and api method to relayout annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-811) new 'annotation type' field for marking annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | ensure we have valid fontMetrics - (NPE was raised...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | Merge branch 'updaternasecstr_JAL-889' into develop
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885) RNA helix and purine pyrimidine colouring...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-885 - catch race condition when rna structure width...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-969 - refactor initialisation of automatic annotation...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-885 more efficient calculation and robust for mismatch...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885 JAL-580) ignore invalid RNA structure lines
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-902 structure conservation row for applet
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-970) interactive editing of RNA helix annotation...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-966) efficiency
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-889) ensure annotation row is revalidated after...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885,JAL-580) structure consensus should only be...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-889) ensure latest version of RNA pairlist is...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 - display position where wuss parsing error...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation string is up to date...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | use stack rather than vector and throw parse exceptions
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation is reparsed if necessary...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | NPE exception if annotation manually edited
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | extend API
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | refactor to use model API
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-963) refactor RNA helix helper class to schemes
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | Merge branch 'refactor_aligcalcs' into develop
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) efficiency
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) fix logic bug introduced during refactoring
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) removed TODOs
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | renamed menu entry to avoid field name clash
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) todo test re refactoring and possible change...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) refactored alignmentViewport base class to...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-961) refactored consensus and rna structure consensus...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-961) use simplified notification logic to test...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-961) methods for checking calculation status
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-961) more calculation annotation and result object...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-967) ensure annotation panel is rendered with...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | Refactored alignment viewport to use common base, extended...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | new base class to hold core visualization settings...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | todo
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | static convenience methods for constructing and calculating...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | use List rather than Vector
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | extend alignPanel api with OOMHandler call to raise...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | remove unnecessary import
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | Introduced new AlignCalcWorker/manager interface.
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | (JAL-965) new api methods to allow features to be loaded...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | (JAL-962) rejig parameter processing order so groups...
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commit | commitdiff | tree |
| 2011-10-21 |
jprocter | (JAL-962) allow group visibility to be specified before...
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commit | commitdiff | tree |
| 2011-10-20 |
jprocter | (JAL-963) jalviewLite RNA alignment example (reusing...
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commit | commitdiff | tree |
| 2011-10-18 |
jprocter | Merge branch 'logo_feature_JAL-958' into develop
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commit | commitdiff | tree |
| 2011-10-18 |
jprocter | backout parts of the interface from another development...
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commit | commitdiff | tree |
| 2011-10-18 |
jprocter | Merge branch 'logo_feature_JAL-958' into develop
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commit | commitdiff | tree |
| 2011-10-18 |
jprocter | (Jalview 3) refactored Graphics2D annotation rendering...
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commit | commitdiff | tree |
| 2011-10-17 |
jprocter | Merge branch 'logo_feature_JAL-958' into develop
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commit | commitdiff | tree |
| 2011-10-17 |
jprocter | (ahem) new renderer package containing api and rendering...
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commit | commitdiff | tree |
| 2011-10-14 |
jprocter | Merge branch 'logo_feature_JAL-958' into develop
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commit | commitdiff | tree |
| 2011-10-14 |
jprocter | (JAL-958) documented normalised sequence logo parameter
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commit | commitdiff | tree |
| 2011-10-14 |
jprocter | (JAL-958) - normalised sequence logo for applet
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commit | commitdiff | tree |
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