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2019-04-04	Ben Soares	JAL-3130 JAL-3007 improvements to gradle build	commit \| commitdiff \| tree
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11. Now...	commit \| commitdiff \| tree
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11 and...	commit \| commitdiff \| tree
2019-03-22	Ben Soares	JAL-3130 adding two more modules picked up by gradle...	commit \| commitdiff \| tree
2019-03-22	Ben Soares	JAL-3130 mark some deprecated methods in Regex as ...	commit \| commitdiff \| tree
2019-03-21	Ben Soares	JAL-3130 Replaced deprecated Class.newInstance() with...	commit \| commitdiff \| tree
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecation_a...	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3130 remove some comments on quit. fix modules...	commit \| commitdiff \| tree
2019-03-19	Ben Soares	JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...	commit \| commitdiff \| tree
2019-03-18	Ben Soares	JAL-3130 removing no longer needed JRE (going to use...	commit \| commitdiff \| tree
2019-03-18	Ben Soares	JAL-3130 Removing accidentally committed tmp dir	commit \| commitdiff \| tree
2019-03-07	Ben Soares	JAL-3130 deprecation change preparation	commit \| commitdiff \| tree
2019-03-05	Ben Soares	JAL-3141 Fixed inconsistent (changed) message labels...	commit \| commitdiff \| tree
2019-02-22	Ben Soares	JAL-3141 improved message for asking whether to delete...	commit \| commitdiff \| tree
2019-02-21	Ben Soares	JAL-3141 Sensible refactoring for confirming deleting...	commit \| commitdiff \| tree
2019-02-17	Ben Soares	JAL-3141 User warning when deleting old backup files...	commit \| commitdiff \| tree
2019-02-15	Ben Soares	JAL-3141 re-order deletion of old files and check lastModifi...	commit \| commitdiff \| tree
2019-02-14	Ben Soares	JAL-3141 Added warning/confirmation when suffixReverse...	commit \| commitdiff \| tree
2019-02-14	Ben Soares	JAL-3141 Moved 'Previously saved scheme' combo box...	commit \| commitdiff \| tree
2019-02-01	Ben Soares	JAL-3141 Slight efficiency gain in detecting backupfiles...	commit \| commitdiff \| tree
2019-01-30	Ben Soares	JAL-3141 Enabled the 'Include backpup files' checkbox...	commit \| commitdiff \| tree
2019-01-29	Ben Soares	JAL-3141 Found a good fix for updating the FileChooser...	commit \| commitdiff \| tree
2019-01-29	Ben Soares	JAL-3141 Found a (not ideal) fix for updating the FileChoose...	commit \| commitdiff \| tree
2019-01-28	Ben Soares	JAL-3141 improvement on BackupFilenameParts filename...	commit \| commitdiff \| tree
2019-01-28	Ben Soares	JAL-3141 fixed test	commit \| commitdiff \| tree
2019-01-25	Ben Soares	JAL-3141. This adds quite a lot of code to allow an...	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Added a '.fa' to filename examples	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Change of label (change of '_' character to...	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Change of label	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Removed border around example filenames in...	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 New layout and wording of Backups Preferences...	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Eclipse re-formatting of file	commit \| commitdiff \| tree
2019-01-24	Ben Soares	JAL-3141 Reformatted code in eclipse	commit \| commitdiff \| tree
2019-01-23	Ben Soares	JAL-3141 Added Presets options in the Backups Preferences...	commit \| commitdiff \| tree
2019-01-22	Ben Soares	JAL-3141 Fixed what happens when suffix template has...	commit \| commitdiff \| tree
2019-01-22	Ben Soares	JAL-3141 New message translations	commit \| commitdiff \| tree
2019-01-21	Ben Soares	JAL-3141 Rejigged the Preferences tab and changed some...	commit \| commitdiff \| tree
2019-01-21	Ben Soares	JAL-3141 Fixed tests for new placement of suffix after...	commit \| commitdiff \| tree
2019-01-20	Ben Soares	JAL-3141 removing diagnostic output	commit \| commitdiff \| tree
2019-01-20	Ben Soares	JAL-3141 Fixed example filenames in Preferences pane...	commit \| commitdiff \| tree
2019-01-20	Ben Soares	JAL-3141 Changed suffix position to after the extension...	commit \| commitdiff \| tree
2019-01-20	Ben Soares	JAL-3141 Re-added some changes in Jalview2XML missed...	commit \| commitdiff \| tree
2019-01-16	Ben Soares	JAL-3141 Remove no longer used exampleLabel	commit \| commitdiff \| tree
2019-01-14	Ben Soares	JAL-3141 Forgot this file, sorry!	commit \| commitdiff \| tree
2019-01-14	Ben Soares	JAL-3141 Added a 'Save Project as...' File menu item...	commit \| commitdiff \| tree
2019-01-14	Ben Soares	JAL-3141 Made more constants	commit \| commitdiff \| tree
2019-01-09	Ben Soares	JAL-3141 removed redundant method to tests	commit \| commitdiff \| tree
2019-01-09	Ben Soares	JAL-3141 language word ending corrections	commit \| commitdiff \| tree
2019-01-09	Ben Soares	JAL-3141 Added i18n for the example filenames in Preferences	commit \| commitdiff \| tree
2019-01-09	Ben Soares	JAL-3141 forgot to add this file after extracting the...	commit \| commitdiff \| tree
2019-01-09	Ben Soares	JAL-3141 Made one more suggested change from code review	commit \| commitdiff \| tree
2019-01-08	Ben Soares	JAL-3141 Made some more suggested changes from code...	commit \| commitdiff \| tree
2019-01-08	Ben Soares	JAL-3141 Made some suggested changes from code review	commit \| commitdiff \| tree
2018-12-18	Ben Soares	JAL-3130 added a javac helper script too (like the...	commit \| commitdiff \| tree
2018-12-17	Ben Soares	JAL-3174 Merging in some test filename-case fixes	commit \| commitdiff \| tree
2018-12-17	Ben Soares	JAL-3130 java bash wrapper to choose which java to...	commit \| commitdiff \| tree
2018-12-17	Ben Soares	JAL-3130 Some fixes to ant build xml, and the modules...	commit \| commitdiff \| tree
2018-12-14	Ben Soares	JAL-3130 single class testing on CLI with ant [ -Dclass...	commit \| commitdiff \| tree
2018-12-13	Ben Soares	JAL-3130 Fixing a few more tests that pass on a Mac...	commit \| commitdiff \| tree
2018-12-13	Ben Soares	JAL-3130 Use non-deprecated check for Mac CMD key press	commit \| commitdiff \| tree
2018-12-13	Ben Soares	JAL-3130 Attempting to fix 8 tests that pass on a Mac...	commit \| commitdiff \| tree
2018-12-11	Ben Soares	JAL-3130 Turns out Quit/About/Preferences handlers...	commit \| commitdiff \| tree
2018-12-10	Ben Soares	JAL-3130 another tweak for bamboo to add the JDK jmods...	commit \| commitdiff \| tree
2018-12-10	Ben Soares	JAL-3130 build.xml tweaks for clover-3.4.1	commit \| commitdiff \| tree
2018-12-10	Ben Soares	JAL-3130 tweaked build.xml to do java 11 bytecode compiling...	commit \| commitdiff \| tree
2018-12-07	Ben Soares	JAL-3130 Some re-reorganisation for build process	commit \| commitdiff \| tree
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	commit \| commitdiff \| tree
2018-12-03	Ben Soares	JAL-3130 de-multi-release-jar.sh Script to make multi...	commit \| commitdiff \| tree
2018-12-03	Ben Soares	JAL-3130 Added flagged runtime 'Reflection' check on...	commit \| commitdiff \| tree
2018-11-30	Ben Soares	JAL-3130 refactored a lot of this. See the JAVA-11...	commit \| commitdiff \| tree
2018-11-20	Ben Soares	.gitignore changes	commit \| commitdiff \| tree
2018-11-19	Ben Soares	JAL-1988 JAL-3130 New jlinked JRE in jalview_java2...	commit \| commitdiff \| tree
2018-11-09	Ben Soares	JAL-1988 This fixes the Quit response when user cancels...	commit \| commitdiff \| tree
2018-11-08	Ben Soares	JAL-1988 JAL-3130 Now we're in Java 11 land, using...	commit \| commitdiff \| tree
2018-11-08	Ben Soares	JAL-1988 tidying, plus don't add Preferences to Tools...	commit \| commitdiff \| tree
2018-11-08	Ben Soares	JAL-1988 JAVA 11 enabled version with Quit, Preferences...	commit \| commitdiff \| tree
2018-11-05	Ben Soares	JAL-1988 Investigating...	commit \| commitdiff \| tree
2018-11-05	Ben Soares	JAL-3141 Slightly improved message and more thorough...	commit \| commitdiff \| tree
2018-11-05	Ben Soares	JAL-3141 couple of minor fixes for example files being...	commit \| commitdiff \| tree
2018-11-02	Ben Soares	JAL-3141 Tests now available and working, bringing...	commit \| commitdiff \| tree
2018-11-01	Ben Soares	JAL-3141 Preferences 'Backups' tab now fits. Moved...	commit \| commitdiff \| tree
2018-10-31	Ben Soares	JAL-3141 Preferences 'Backups' tab now working. Doesn...	commit \| commitdiff \| tree
2018-10-25	Ben Soares	JAL-3141 Ostensibly all backups working for alignment...	commit \| commitdiff \| tree
2018-10-24	Ben Soares	JAL-3141 Code checkout. Not compiling.	commit \| commitdiff \| tree
2018-10-24	Ben Soares	JAL-3141 Code checkout. Not compiling.	commit \| commitdiff \| tree
2018-10-23	Ben Soares	BackupFilter and other unfinished business	commit \| commitdiff \| tree
2018-10-22	Ben Soares	JAL-3141 Taken the backing up code out of FileChooser...	commit \| commitdiff \| tree
2018-10-22	Ben Soares	JAL-3141 Taken the backing up code out of FileChooser...	commit \| commitdiff \| tree
2018-10-22	Ben Soares	JAL-3141 Tidying	commit \| commitdiff \| tree
2018-10-19	Ben Soares	JAL-3141 Backup files being created with default suffix...	commit \| commitdiff \| tree
2018-08-27	Ben Soares	JAL-3061 / JAL-3053	commit \| commitdiff \| tree
2018-08-03	Ben Soares	JAL-3061	commit \| commitdiff \| tree
2018-08-03	Ben Soares	Merge branch 'bug/JAL-3061_RNA_secondary_structure_annotatio...	commit \| commitdiff \| tree
2018-08-02	Ben Soares	JAL-3053	commit \| commitdiff \| tree

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