| 2017-04-05 |
gmungoc | JAL-2446 various get and find methods added with test...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2446 method isNonPositional() added
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commit | commitdiff | tree |
| 2017-04-04 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2314 made non-test method non-public
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2314
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2461
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2446 pseudo-random generator unit test, and fixes...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2472 PrivilegedAccessor added
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 code and help tidy for review comments
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 don't apply lower case colour to upper case
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2399textColour
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 JAL-1933 test updated to include Occupancy
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 always run setup!
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 more test coverage for AnnotationColourGradient
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | JAL-2446 optimised new method to find feature colour...
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | JAL-2311 suppress autocalc'd annotation to isolate...
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2306 assert no DAS sources
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2438 removed (non-functional) lastSeq, lastSequenceFeatures
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2243 update discovered features on opening structure...
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2438 check for null FeatureRenderer
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commit | commitdiff | tree |
| 2017-03-20 |
gmungoc | JAL-2446 FeatureStore with NCList - work in progress
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2443 push getResidueBoxColour inside getResidueColour
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 corrected getFeatureRenderer()
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2442 applet feature transparency also on overview...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 handle null FeatureRenderer in FeatureColourFinder
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 refactored checks for 'no features displayed'
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 clarify code and javadoc, reinstate updateFeatures...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | Merge branch 'develop' into bug/JAL-2436featureRendererThreading
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 unit test, fixes, Javadoc updates
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 unit tests for FeatureColourFinder (transparency...
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 Javadoc updates
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 comment/Javadoc tidies
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commit | commitdiff | tree |
| 2017-03-13 |
gmungoc | JAL-2438 corrected handling of default colour
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commit | commitdiff | tree |
| 2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRenderer...
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commit | commitdiff | tree |
| 2017-03-08 |
gmungoc | JAL-2430 colour columns hidden in alignment gray on...
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commit | commitdiff | tree |
| 2017-03-08 |
gmungoc | JAL-2295 avoid quotes breaking attribute value parsing
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commit | commitdiff | tree |
| 2017-03-07 |
gmungoc | JAL-2295 status messages for Chimera attributes set...
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commit | commitdiff | tree |
| 2017-03-02 |
gmungoc | JAL-2295 tweak order and wording of Superpose menu...
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commit | commitdiff | tree |
| 2017-03-02 |
gmungoc | JAL-2295 make 'Jmol' menu appear; enable/disable Superpose...
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commit | commitdiff | tree |
| 2017-03-01 |
gmungoc | JAL-1264 smarter way to skip autocalc'd annotations...
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commit | commitdiff | tree |
| 2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes...
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commit | commitdiff | tree |
| 2017-02-14 |
gmungoc | JAL-2346 disable 'threshold min/max' when 'use original...
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commit | commitdiff | tree |
| 2017-02-14 |
gmungoc | JAL-2346 remove refactored fields, fix test for above...
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commit | commitdiff | tree |
| 2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice
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commit | commitdiff | tree |
| 2017-02-10 |
gmungoc | JAL-2371 small move of code, typo correction
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove...
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2401 tweaked button text, added Spanish
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2401 change 'Lower Case Colour' to checkbox with...
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 no test for lower case consensus as not expected...
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 ensure some colour scheme (may be None) is...
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2371 skip upper-casing consensus as it already is
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 check for circular reference in SequenceGroup...
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 set initial selection group alignment context
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commit | commitdiff | tree |
| 2017-02-09 |
gmungoc | JAL-2405 enable nucleotide/peptide colour schemes in...
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commit | commitdiff | tree |
| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored...
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commit | commitdiff | tree |
| 2017-02-08 |
gmungoc | JAL-2401 fix for NPE on selectedButtons, tweak for...
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commit | commitdiff | tree |
| 2017-02-08 |
gmungoc | JAL-2399 JAL-2400 tidy Text Colour wording, behaviour...
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2401 Lower Case Colour toggleable, help text added
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2379 removed unused commented code
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2397 flag provided for 2.10.1 PCA gap calculation...
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2398 include 'compatibility mode' for C->R score...
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculation...
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2397 PCA gap cost uses last column of score matrix
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commit | commitdiff | tree |
| 2017-02-07 |
gmungoc | JAL-2398 corrected entry for C->R in Blosum62 matrix
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commit | commitdiff | tree |
| 2017-02-06 |
gmungoc | JAL-2379 computePairwiseScores() moved to ScoreMatrix
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commit | commitdiff | tree |
| 2017-02-03 |
gmungoc | JAL-2379 'direct' pairwise score calculation for PCA...
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commit | commitdiff | tree |
| 2017-02-01 |
gmungoc | JAL-2371 (slight!) simplification of isApplicableTo()
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commit | commitdiff | tree |
| 2017-02-01 |
gmungoc | JAL-2383 and Spanish!
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commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 commented code removed only
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commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueShading
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commit | commitdiff | tree |
| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPanel...
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2379 commented out code removed
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader...
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2099 belated unit test
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commit | commitdiff | tree |
| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 corrected comment
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2360 C is Pink with consensus > 85% (not 100%)
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicability...
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSchemeApp...
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2344 test fix and code tidy for review comments
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commit | commitdiff | tree |
| 2017-01-26 |
gmungoc | JAL-2380 code tidy after review
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commit | commitdiff | tree |
| 2017-01-25 |
gmungoc | JAL-2344 push Cache.getProperty("LAST_DIRECTORY") inside...
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2379 made SparseMatrix.divide() so as to exactly...
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refactoring for
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commit | commitdiff | tree |
| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour...
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commit | commitdiff | tree |
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