git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
JAL-2110 TODO for JAL-2131
2016-04-04
Jim Procter
Merge branch 'optimisation/JAL-2001' into develop
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 drop isSelected(int) in favour of original...
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 catch -ve column values
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 TODO for new ColumnSelection API
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-1551 formatting
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 - note about possible side effect on JalviewLite...
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2010 refactoring todo
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 use fast column selection test
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 faster check for a column being selected
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 javadoc
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 faster getMax/getMin selected column, with...
commit
|
commitdiff
|
tree
2016-04-04
Jim Procter
JAL-2001 JAL-1722 - store selection as ArrayList and...
commit
|
commitdiff
|
tree
2016-01-21
Jim Procter
JAL-1995 remove jalviewApplet.jar from tree and added...
commit
|
commitdiff
|
tree
2015-12-09
Jim Procter
JAL-1982 hotfix to prevent NPE with applet launch on...
commit
|
commitdiff
|
tree
2015-11-10
Jim Procter
JAL-653 added missing pragma string to processing filter
commit
|
commitdiff
|
tree
2015-11-10
Jim Procter
Merge branch 'features/JAL-1705_ensembl' of http:/...
commit
|
commitdiff
|
tree
2015-10-30
Jim Procter
Merge branch 'JAL-1954_pfamformatbroke' into develop
commit
|
commitdiff
|
tree
2015-10-30
Jim Procter
JAL-1954 rejigged PFAMFile to split on ‘\t’ if no space...
commit
|
commitdiff
|
tree
2015-10-30
Jim Procter
JAL-1954 formatting
commit
|
commitdiff
|
tree
2015-10-28
Jim Procter
JAL-1954 test PFAM import results in AlignmentI.hasValidSequ...
commit
|
commitdiff
|
tree
2015-10-16
Jim Procter
JAL-1925 version change
commit
|
commitdiff
|
tree
2015-10-16
Jim Procter
JAL-1925 update what's new and release notes
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 remove blanket sign of examples/*.jar
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 id rather than name attrib
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 sign the applet with/out timestamps
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 add explicit proxy for benefit of jalview...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 fix ant target dependencies
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 make timestamping optional using -Dtimestamp
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 add jalview.tsaurl for specifying timestamp...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1791 add jalview.tsaurl for specifying timestamp...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
Merge branch 'bug/JAL-1923_290b2_group_annots' into...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1923 formatting
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1923 add groups to codon-complement and notify...
commit
|
commitdiff
|
tree
2015-10-15
Jim Procter
JAL-1923 fix: don’t add group twice
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
JAL-1684 updated fragment alignment for example and...
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
JAL-1894 add licensing
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
JAL-1894 update what's new
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
JAL-1894 formatting
commit
|
commitdiff
|
tree
2015-10-08
Jim Procter
JAL-1894 organise imports
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1894 source formatting
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1894 organise imports
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1894 update release date
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1912 formatting
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1912 javadoc for adjustForAlignment stating current...
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
JAL-1912 efficiency: look up sequenceMapping once per...
commit
|
commitdiff
|
tree
2015-10-07
Jim Procter
Merge branch 'features/JAL-1912_biojson-per-sequence...
commit
|
commitdiff
|
tree
2015-10-05
Jim Procter
Merge branch 'develop' into features/JAL-1912_biojson...
commit
|
commitdiff
|
tree
2015-10-05
Jim Procter
JAL-1894 note about menu option bugfix JAL-1865 JAL...
commit
|
commitdiff
|
tree
2015-10-05
Jim Procter
JAL-1894 update release notes for JAL-1815 JAL-1860
commit
|
commitdiff
|
tree
2015-10-05
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
commit
|
commitdiff
|
tree
2015-10-05
Jim Procter
JAL-1684 trimmed proteins to just those sequences that...
commit
|
commitdiff
|
tree
2015-10-02
Jim Procter
JAL-1900 JAL-1625 disable iconify button for internal...
commit
|
commitdiff
|
tree
2015-10-01
Jim Procter
JAL-1894 release notes update and 6th October release...
commit
|
commitdiff
|
tree
2015-09-30
Jim Procter
fix for JAL-1883
commit
|
commitdiff
|
tree
2015-09-22
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
commit
|
commitdiff
|
tree
2015-09-22
Jim Procter
JAL-1894 update RELEASE for 2.9.0b1 release
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1889 wrong clean for buildTest!
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1270 JAL-1889 move the stevesoft test back into...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1889 remove non-UTF8 characters so we can build...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 updated documentation for unit testing in...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 set verbosity and exclude the 'parallel' attribute...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 JAL-1551 format XML file (2 spaces, no tabs...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 compile tests to separate directory and pass...
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 documentation for testing target
commit
|
commitdiff
|
tree
2015-09-18
Jim Procter
JAL-1888 property to specify which testng groups should...
commit
|
commitdiff
|
tree
2015-09-16
Jim Procter
Merge branch 'JAL-1612_JAL-1439_JAL-1845_osx_icons_signing_i...
commit
|
commitdiff
|
tree
2015-09-16
Jim Procter
JAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock...
commit
|
commitdiff
|
tree
2015-09-11
Jim Procter
JAL-1884 add the JNLP template to jalview_jnlp_vm.jar
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 fix broken link in docs
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 reformat help html - 2 spaces indents, no...
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 licencing for help html
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 licencing for doc directory files
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 licencing for groovy files
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 licencing for new files in test and utils
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1684 updated example to just a fragment of the...
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 add reference seq docs to index/etc
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 formatting and updated release date
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 formatting
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-736 JAL-1645 brief documentation about physicochemical...
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
Merge branch 'develop' into release/2_9_documentation
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 typo
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 JAL-1595 sort by RNA helices docs
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 more cross-links and fixing menu entries
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 links from whats New page
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1645 yet more documentation tweaks
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1370 correct i18n message for reference sequence...
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1370 detect any type of gap character in reference...
commit
|
commitdiff
|
tree
2015-09-10
Jim Procter
JAL-1370 mark Jpred query sequence as reference sequence
commit
|
commitdiff
|
tree
2015-09-09
Jim Procter
JAL-1645 rejig annotation selection dialog box
commit
|
commitdiff
|
tree
2015-09-09
Jim Procter
JAL-1645 rejig biojson/biojsmsa docs
commit
|
commitdiff
|
tree
2015-09-09
Jim Procter
JAL-1645 documentation tweaks
commit
|
commitdiff
|
tree
next