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JAL-2629 refactoring of Hmmer preferences
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences
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2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes
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2018-02-19 gmungocJAL-2629 formatting only
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2017-08-10 gmungocMerge branch 'develop' of https://source.jalview.org...
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2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus...
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2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code)
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2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complete...
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2017-08-08 gmungocJAL-2650 configure new viewport settings before selecting...
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2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for...
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2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example...
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2017-08-03 gmungocJAL-2500 JAL-2365 feature colour "gray" _not_ "lightgray...
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2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for...
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2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example...
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2017-08-03 gmungocJAL-2435 test for 'mirror font' option visible (not...
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2017-08-02 gmungocJAL-2418 corrected link url for "overview" target
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2017-08-01 gmungocJAL-2611 reinstate missed merge - again!
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2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop
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2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview...
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2017-07-31 gmungocJAL-2623 updated Overview/structure on input of threshold...
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2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id...
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2017-07-31 gmungocJAL-2631 test updated for added kd graduated feature...
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2017-07-31 gmungocJAL-2623 JAL-2015 set Below Threshold on FeatureColour...
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2017-07-31 gmungocJAL-2630 applet update overview on release of threshold...
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2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scrolled...
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2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from...
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2017-07-28 gmungocJAL-147 unit test for no vertical move of Overview...
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2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold...
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2017-07-28 gmungocJAL-2631 make minimum colour not white
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2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colour...
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2017-07-28 gmungocJAL-2631 add graduated colour kdH features to example
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2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring...
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2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly
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2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0
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2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll position...
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2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment!
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2017-07-17 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
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2017-07-17 gmungocJAL-1648 JAL-2447 Spanish translations
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2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapped...
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2017-07-06 gmungocJAL-147 unit test for hide/show sequences update ViewportRanges
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2017-07-06 gmungocJAL-2605 ensure correct scale width calculation
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2017-07-05 gmungocJAL-147 don't update overview for column selection...
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2017-07-05 gmungocJAL-147 additions to unit test, check for negative...
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2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first...
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2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide...
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2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed
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2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show...
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2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide...
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2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel
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2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed
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2017-07-04 gmungocJAL-147 call method that sets visible width when drawing...
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2017-07-04 gmungocJAL-147 extract local variable for ease of debugging
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2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
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2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids
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2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions
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2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scroll...
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2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode
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2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id...
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2017-06-30 gmungocJAL-2602 unit test added
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2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for...
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2017-06-30 gmungocMerge branch 'bug/JAL-2597' into develop
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2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
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2017-06-30 gmungocJAL-2602 same fix for applet
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2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
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2017-06-29 gmungocJAL-2605 exclude left/right scale in sequence column...
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2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop
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2017-06-27 gmungocJAL-2602 check for null or empty description when copying...
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2017-06-15 gmungocJAL-2563 test updated for fix
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2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring...
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2017-06-15 gmungocJAL-2418 typos
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2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop
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2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split...
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2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation across...
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2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview
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2017-06-09 gmungocJAL-2592 distinguish "User Defined" (scheme name) from...
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2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped...
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2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor...
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2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied...
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2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defined...
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2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly
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2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by...
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2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
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2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap
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2017-05-22 gmungocJAL-2504 update the right feature colour when creating...
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2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
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2017-05-22 gmungocJAL-2544 check feature overlaps selection region
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2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition()
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2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature...
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2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures
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2017-05-16 gmungocJAL-2517 restore complex colour scheme on Cancel in...
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2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
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2017-05-15 gmungocJAL-2532 new feature types and colour changes from...
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2017-05-09 gmungocJAL-1632 correct i18n and NPE
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2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation
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2017-05-08 gmungocJAL-1632 i18n for warning messages
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2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'...
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2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScreenFont
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2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend...
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2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Sequence...
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2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
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2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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