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JAL-3158 superseded superposeStructures methods removed
2020-03-03 gmungocJAL-3158 superseded superposeStructures methods removed
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2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure...
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2020-02-29 gmungocJAL-3518 correct override for ChimeraX colour by residues
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2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStructures...
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2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides
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2020-02-21 gmungocJAL-2422 tidy of methods and parameters
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2020-02-21 gmungocJAL-2422 general pull-up/removal of common or unused...
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2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands...
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2020-02-04 gmungocJAL-2422 remove temporary debug code
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2020-02-04 gmungocJAL-2422 fixed stopProgressBar (broken in pull up refactoring)
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2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for ChimeraX...
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2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for...
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2020-01-31 gmungocJAL-2422 more responsive Chimera/X path prompts in...
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2020-01-30 gmungocJAL-2422 save/restore ChimeraX session
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2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences
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2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX...
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2019-12-13 gmungocJAL-2422 'label' command to highlight ChimeraX residue...
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2019-12-13 gmungocJAL-2422 write Jalview features to ChimeraX via command...
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2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened...
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2019-09-26 gmungocJAL-2481 remove code duplication left by merge
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2019-09-26 gmungocJAL-3441 action double-click in Feature Type column...
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2019-08-23 gmungocJAL-3141 correct cast of spinner value
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2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation
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2019-08-21 gmungocJAL-3187 minor code tidying, todo removal
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2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) transfer...
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2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored...
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2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
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2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'...
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2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId()
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2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence
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2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
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2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
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2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to...
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2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
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2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas
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2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHeight()
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2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
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2019-07-26 gmungocJAL-1793 only decode specific special characters in...
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2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
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2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
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2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
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2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
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2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests
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2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
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2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
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2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-07-04 gmungocJAL-3111 help pages minor corrections
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2019-06-18 gmungocJAL-3313 don't double count mapped codons
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2019-06-18 gmungocJAL-3187 javadoc
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2019-06-18 gmungocJAL-3304 option to export linked features also for...
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2019-06-18 gmungocJAL-3304 option to export linked features in Jalview...
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2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes
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2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split...
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2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature...
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2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared...
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2019-06-17 gmungocJAL-3187 update unit test - protein variants not now...
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2019-06-17 gmungocJAL-3187 add sequence to feature details table (and...
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2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera
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2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants
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2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript
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2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present
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2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11 gmungocJAL-3111 update release date placeholder
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2019-06-11 gmungocJAL-3288 fixes for gain/lose focus
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2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript
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2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
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2019-06-07 gmungocJAL-3187 change fields to local variables
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2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementFeatur...
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2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
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2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chromosoma...
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2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from...
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2019-06-06 gmungocMerge branch 'develop' into trialMerge
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2019-06-06 gmungocJAL-3187 commit to enable merge from develop
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2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid...
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2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query
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2019-05-29 gmungocJAL-2738 error logging if no ##reference found
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2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
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2019-05-27 gmungocJAL-3141 test file in test folder not examples
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2019-05-24 gmungocJAL-1988 Spanish typo corrección
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2019-05-22 gmungocJAL-3111 help file spelling correction
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2019-05-21 gmungocJAL-3273 small correction to expected result calculation
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2019-05-06 gmungocJAL-3240 known issue for release notes
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2019-05-06 gmungocJAL-3239 release note
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2019-05-06 gmungocJAL-3244 release note
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2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monospacedE...
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2019-05-06 gmungocJAL-3244 delete obsolete method
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2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even...
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2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop
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2019-05-02 gmungocJAL-3244 renamed Platform method for clarity
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2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
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2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadability...
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2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
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2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency
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