| 2017-04-19 |
gmungoc | JAL-2480 cache min-max score values per sequence and...
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2483 use SequenceFeatures to look up groups, types...
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 subtract from total length on deleting feature
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 more test coverage
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 test coverage / bug fixes / javadoc
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 SequenceFeaturesI encapsulates features api
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 comment updates
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 promote Range from test to src to replace...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 tidied up / generalised binary search in FeatureStore
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 add call to SequenceFeatures.delete(); use...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2361 tweak layout of warning message
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 remove unused check for sequences aligned
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 ensure array held in Matrix is immutable
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 public static methods to convert distance...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2446 getGroups, getFeatures for positional/non...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 find feature types for one or more groups...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2403 improved ScoreModelI hierarchy as per Kira...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 getFeatureTypesForGroup() added
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2428 Javadoc
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 added getFeatureGroups
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 unit tests for PCA.computeSimilarity, signature...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 removed remaining jvCalcMode references from PCA
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2416 test updated for reinstatement of '*' row...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 SequenceFeatures.hasFeatures() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 FeatureStore.isEmpty() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2361 option to save on OK of changed named colour...
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commit | commitdiff | tree |
| 2017-04-09 |
gmungoc | JAL-2393 remove unused commented code
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2393 code tidying for review comments
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2446 fix size maintenance during add
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2446 added delete/contains to pseudo-random tests...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2361 make a modified saved scheme the backout checkpoint...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2446 added contains, delete, checks for inclusion...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2446 pseudo-random test of findOverlaps, bug fix...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2384 JAL-2371 update ResidueShader on change of...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 apply any saved changes to current colour...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2446 various get and find methods added with test...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2446 method isNonPositional() added
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commit | commitdiff | tree |
| 2017-04-04 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2314 made non-test method non-public
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2314
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2461
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2435 further adjustments to behaviour in split...
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScreenFont
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2446 pseudo-random generator unit test, and fixes...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2472 PrivilegedAccessor added
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2435 tidy code
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-1608 unused method removed
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2435 slightly more sensible behaviour changing...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScreenFont
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 code and help tidy for review comments
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 don't apply lower case colour to upper case
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2399textColour
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 JAL-1933 test updated to include Occupancy
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 always run setup!
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 more test coverage for AnnotationColourGradient
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 JAL-728 reduced dependency on Blosum62 implementati...
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 revert to '*' not '-' in score matrix, handle...
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 explicit constant for unknown/unknown identity...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 format matrix more readably
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 JAL-2403 remove unused '*' row/column from...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2403 further test coverage for ScoreMatrix, min...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 more test coverage of matrix parser
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 parse score matrices in either NCBI or AAindex...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 amended to AAindex format
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 amended to (as near as possible) strict NCBI...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 class Javadoc updates prior to parsing changes
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2468 change score model in PCAModel when switching
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 tidy up after switch from ' ' to '-' in score...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 score matrix gap symbol (if any) dynamically...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 tooltip with descriptions for score models...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 add score model description field for tooltip...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2403 SWDistanceModel now SmithWatermanModel - a...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 use '-' not space for gap in score matrices
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2428 unused method deleted
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2403 PIDDistanceModel deleted as superseded by...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2428 pass AlignmentView to TreeModel so Show Input...
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2428 simplify TreeModel constructors, add getOriginalData
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2428 use 'correct' name for selected score model
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text...
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-1632 named parameters
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2398 corrected BLOSUM62 C -> R score in resource...
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commit | commitdiff | tree |
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