| 2017-05-04 |
gmungoc | JAL-2505 delete and readd amended sequence feature
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2480 JAL-2505 guard against duplicating links
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 basic sanity test of fetching example accessions
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 test a Uniprot fetch
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2105 Ensembl REST now at 5.0
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2485 JAL-2246 test Uniprot FTS summary
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-1933 Spanish for Occupancy
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge remote-tracking branch
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commit | commitdiff | tree |
| 2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-27 |
gmungoc | JAL-2492 use SequenceFeatures.getNonPositionalFeatures()
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commit | commitdiff | tree |
| 2017-04-27 |
gmungoc | JAL-2480 don't allow null type in SequenceFeature
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commit | commitdiff | tree |
| 2017-04-26 |
gmungoc | JAL-2490 findFeaturesAtRes with performant feature...
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commit | commitdiff | tree |
| 2017-04-25 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2487 remove redundant refreshGUI to minimise threading...
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2424 final contig now an inclusive range
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations for superposition / errors
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations added
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2361 Spanish text added
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commit | commitdiff | tree |
| 2017-04-20 |
gmungoc | JAL-2483 JAL-2481 findAllFeatures without scanning...
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2480 cache min-max score values per sequence and...
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2483 use SequenceFeatures to look up groups, types...
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 subtract from total length on deleting feature
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 more test coverage
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 test coverage / bug fixes / javadoc
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 SequenceFeaturesI encapsulates features api
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 comment updates
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 promote Range from test to src to replace...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 tidied up / generalised binary search in FeatureStore
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 add call to SequenceFeatures.delete(); use...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2361 tweak layout of warning message
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2446 getGroups, getFeatures for positional/non...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 find feature types for one or more groups...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 getFeatureTypesForGroup() added
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 added getFeatureGroups
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 SequenceFeatures.hasFeatures() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 FeatureStore.isEmpty() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2361 option to save on OK of changed named colour...
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2446 fix size maintenance during add
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2446 added delete/contains to pseudo-random tests...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2361 make a modified saved scheme the backout checkpoint...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2446 added contains, delete, checks for inclusion...
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2446 pseudo-random test of findOverlaps, bug fix...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2384 JAL-2371 update ResidueShader on change of...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 apply any saved changes to current colour...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2446 various get and find methods added with test...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2446 method isNonPositional() added
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commit | commitdiff | tree |
| 2017-04-04 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2314 made non-test method non-public
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2314
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2461
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2446 pseudo-random generator unit test, and fixes...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2472 PrivilegedAccessor added
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 code and help tidy for review comments
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 don't apply lower case colour to upper case
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2399textColour
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 JAL-1933 test updated to include Occupancy
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 always run setup!
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 more test coverage for AnnotationColourGradient
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | JAL-2446 optimised new method to find feature colour...
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-22 |
gmungoc | JAL-2311 suppress autocalc'd annotation to isolate...
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2306 assert no DAS sources
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2438 removed (non-functional) lastSeq, lastSequenceFeatures
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2243 update discovered features on opening structure...
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commit | commitdiff | tree |
| 2017-03-21 |
gmungoc | JAL-2438 check for null FeatureRenderer
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commit | commitdiff | tree |
| 2017-03-20 |
gmungoc | JAL-2446 FeatureStore with NCList - work in progress
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2443 push getResidueBoxColour inside getResidueColour
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 corrected getFeatureRenderer()
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2442 applet feature transparency also on overview...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 handle null FeatureRenderer in FeatureColourFinder
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 refactored checks for 'no features displayed'
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | JAL-2438 clarify code and javadoc, reinstate updateFeatures...
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commit | commitdiff | tree |
| 2017-03-15 |
gmungoc | Merge branch 'develop' into bug/JAL-2436featureRendererThreading
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 unit test, fixes, Javadoc updates
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 unit tests for FeatureColourFinder (transparency...
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 Javadoc updates
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commit | commitdiff | tree |
| 2017-03-14 |
gmungoc | JAL-2438 comment/Javadoc tidies
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commit | commitdiff | tree |
| 2017-03-13 |
gmungoc | JAL-2438 corrected handling of default colour
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commit | commitdiff | tree |
| 2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRenderer...
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commit | commitdiff | tree |
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