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JAL-3449 Work in progress improving XML replacements by gradle
2019-09-26
gmungoc
JAL-2481 remove code duplication left by merge
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2019-09-26
gmungoc
JAL-3441 action double-click in Feature Type column...
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2019-08-23
gmungoc
JAL-3141 correct cast of spinner value
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2019-08-22
gmungoc
JAL-3187 case-insensitive codon variant calculation
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2019-08-21
gmungoc
JAL-3187 minor code tidying, todo removal
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2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) transfer...
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2019-08-07
gmungoc
JAL-3187 (fudge) look in both alignments for stored...
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2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-31
gmungoc
JAL-3389 add .py to restored Chimera session filename...
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2019-07-31
gmungoc
Merge branch 'bug/JAL-3388structureChooserSorting'...
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2019-07-30
gmungoc
JAL-3198 more efficient Sequence.getDisplayId()
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2019-07-30
gmungoc
JAL-3388 correct class for column 0 Ref Sequence
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2019-07-29
gmungoc
JAL-3386 correct wrapped width calculation for headless...
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2019-07-29
gmungoc
JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
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2019-07-29
gmungoc
JAL-3377 add seq-annotations gap to cheight not to...
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2019-07-29
gmungoc
JAL-3377 Javadoc added for getWrappedHeight()
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2019-07-29
gmungoc
JAL-3377 corrected wrapped widths height for IdCanvas
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2019-07-29
gmungoc
JAL-3377 include seq-annotation spacing in getWrappedHeight()
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2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
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2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
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2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
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2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
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2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
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2019-07-16
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-16
gmungoc
JAL-2987 tolerate null double values when formatting...
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2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
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2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
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2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
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2019-07-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2019-07-04
gmungoc
JAL-3111 help pages minor corrections
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2019-06-18
gmungoc
JAL-3313 don't double count mapped codons
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2019-06-18
gmungoc
JAL-3187 javadoc
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2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
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2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
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2019-06-18
gmungoc
JAL-3187 i18n show linked features checkboxes
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2019-06-18
gmungoc
JAL-3305 mirror popup menu column selections in split...
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2019-06-17
gmungoc
JAL-2792 JAL-3187 linked features (if shown) in Feature...
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2019-06-17
gmungoc
JAL-3187 update alignAs code and unit tests for 'shared...
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2019-06-17
gmungoc
JAL-3187 update unit test - protein variants not now...
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2019-06-17
gmungoc
JAL-3187 add sequence to feature details table (and...
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2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
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2019-06-13
gmungoc
JAL-3303 ignore deletions when computing peptide variants
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2019-06-13
gmungoc
JAL-3143 recognise lnc_RNA as transcript
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2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11
gmungoc
JAL-3143 also parse "phase" from JSON response if present
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2019-06-11
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11
gmungoc
JAL-3111 update release date placeholder
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2019-06-11
gmungoc
JAL-3288 fixes for gain/lose focus
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2019-06-11
gmungoc
JAL-3187 CDS has same dataset sequence as transcript
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2019-06-07
gmungoc
JAL-3187 save and restore flags for show complement...
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2019-06-07
gmungoc
JAL-3187 change fields to local variables
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2019-06-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-07
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-07
gmungoc
JAL-3187 Viewport schema attributes for showComplementFeatur...
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2019-06-07
gmungoc
JAL-3251 added optional attributes Sequence.biotype...
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2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chromosoma...
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2019-06-06
gmungoc
Merge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-06
gmungoc
JAL-3187 deletions (of Castor code) after merge from...
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2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
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2019-06-06
gmungoc
JAL-3187 commit to enable merge from develop
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2019-06-05
gmungoc
JAL-3288 override JInternalFrame.setSelected() to avoid...
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2019-06-04
gmungoc
JAL-2386 avoid duplicate pdbids in free text query
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2019-05-29
gmungoc
JAL-2738 error logging if no ##reference found
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2019-05-29
gmungoc
JAL-2738 accept .csi, default to GRCh37:homo_sapiens...
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2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
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2019-05-24
gmungoc
JAL-1988 Spanish typo corrección
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2019-05-22
gmungoc
JAL-3111 help file spelling correction
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2019-05-21
gmungoc
JAL-3273 small correction to expected result calculation
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2019-05-06
gmungoc
JAL-3240 known issue for release notes
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2019-05-06
gmungoc
JAL-3239 release note
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2019-05-06
gmungoc
JAL-3244 release note
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2019-05-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3239monospacedE...
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2019-05-06
gmungoc
JAL-3244 delete obsolete method
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2019-05-02
gmungoc
JAL-3239 draw EPS or SVG one character at a time (even...
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2019-05-02
gmungoc
Merge branch 'bug/JAL-3244jmolWindows' into develop
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2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
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2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
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2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadability...
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2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
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2019-04-29
gmungoc
JAL-3003 help page mention EPS doesn't support transparency
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2019-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2019-04-26
gmungoc
JAL-2743 class Javadoc
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2019-04-26
gmungoc
JAL-2738 JAL-2743 properties to map VCF header to species...
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2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
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2019-04-26
gmungoc
JAL-2808 better tooltip 'delete this condition'
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2019-04-20
gmungoc
JAL-2791 tailored message if find fails on selection...
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2019-04-18
gmungoc
JAL-1793 basic help text for VCF option
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2019-04-18
gmungoc
JAL-3111 additional release notes
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2019-04-18
gmungoc
JAL-3111 small simplification of table tags, valign top
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2019-04-18
gmungoc
JAL-3111 release notes first pass complete
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2019-04-18
gmungoc
JAL-2620 updated help page to mention alternative genetic...
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2019-04-18
gmungoc
JAL-3193 dbSource always "ENSEMBL"
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2019-04-16
gmungoc
Merge branch 'bug/JAL-3218scalePanelPopups' into develop
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2019-04-15
gmungoc
JAL-3193 no separatge EnsemblGenomes source in SequenceFetcher
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2019-04-10
gmungoc
JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
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2019-04-10
gmungoc
JAL-3018 REST version updated to 10.0
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2019-04-03
gmungoc
JAL-3021 show Sequence Details with cursor at top
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2019-04-02
gmungoc
JAL-3218 allow both Hide and Reveal in scale panel...
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2019-03-29
gmungoc
JAL-3140 InstallAnywhere updated to intervalstore-v1...
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