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jalview.git
2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3829_spike minor changes commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters commit | commitdiff | tree | snapshot
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 fixed full class name commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 using reflection for SimpleHttpFileServerFactory commit | commitdiff | tree | snapshot
2021-06-18 Ben SoaresJAL-3594 Updated the Jalview Develop getdown splashscre... commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 commit | commitdiff | tree | snapshot
2021-06-09 Jim Procterfixes JAL-3840 commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows commit | commitdiff | tree | snapshot
2021-06-08 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_macOS_... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3248 Moved old README to doc/old_README and put... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3743 JAL-3745 Fixed NullPointerExceptions happening... commit | commitdiff | tree | snapshot
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... commit | commitdiff | tree | snapshot
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... commit | commitdiff | tree | snapshot
2021-04-13 Ben SoaresJAL-3830 Improved jalview.bat to find either pwsh.exe... commit | commitdiff | tree | snapshot
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... commit | commitdiff | tree | snapshot
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop commit | commitdiff | tree | snapshot
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... commit | commitdiff | tree | snapshot
2021-03-31 Ben SoaresJAL-3830 BAT file wrapper around powershell, so jalview... commit | commitdiff | tree | snapshot
2021-03-30 Ben SoaresJAL-3830 Follow all SymbolicLinks in Windows powershell... commit | commitdiff | tree | snapshot
2021-03-29 Arnaldofixed last commit commit | commitdiff | tree | snapshot
2021-03-29 ArnaldoRequest now parses the whole structures, need to fix... commit | commitdiff | tree | snapshot
2021-03-26 Ben SoaresJAL-3830 delete channel.props and channel.propsv when... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoTDB.executeRequest fix & test passed commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoAdded (and passed !)all the FTS tests from test.fts... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... commit | commitdiff | tree | snapshot
2021-03-24 Ben SoaresJAL-3830 Moved wrappers to bin/jalview.* and make a... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Allow paths to start with '~'. Make path check... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Now using a single universal bash script ... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 add the windows bash script to getdown files... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 bash script that works in both cygwin and... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 Delete wrapper scripts and getdown *v files... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 powershell wrapper tested on linux, macos... commit | commitdiff | tree | snapshot
2021-03-15 Arnaldoadded untracked parsing attempts files commit | commitdiff | tree | snapshot
2021-03-15 ArnaldoAdding tests for 3DB, currently 2/4 corrects on PanelTest commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 minor fix in powershell wrapper commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 powershell follows symlinks as they do exist... commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 Powershell wrapper now works cross-platform... commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 Make wrapper scripts executable commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 powershell wrapper tested and fixed commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 improved bash scripts. Added powershell script... commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 unix and macos wrappers. Symbolic link to... commit | commitdiff | tree | snapshot
2021-03-11 Ben SoaresJAL-3830 Improved for .app dir name with spaces, e... commit | commitdiff | tree | snapshot
2021-03-10 Ben SoaresJAL-3830 install4j adds script to Jalview.app/Contents... commit | commitdiff | tree | snapshot
2021-03-10 Ben SoaresJAL-3830 first draft of wrapper script to go in macOS... commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... Merge branch 'task/JAL-3796_notarization' into develop commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... JAL-3796 minimal steps for notarization and the entitle... commit | commitdiff | tree | snapshot
2021-03-05 Ben SoaresJAL-3618 Enable appBundleIsTraversable in JFileChooser... commit | commitdiff | tree | snapshot
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... commit | commitdiff | tree | snapshot
2021-03-02 ArnaldoFirst commit of 3DB FTS Panel & Restclient commit | commitdiff | tree | snapshot
2021-02-18 gmungocJAL-3822 pass panel height and width to wrapped geometr... commit | commitdiff | tree | snapshot
2021-02-18 gmungocJAL-2422 remove temporary patch (requires ChimeraX... commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3521 Changed wording of INSTALLATION in source... commit | commitdiff | tree | snapshot
2021-02-08 Ben SoaresJAL-3521 Adding a build_properties into sourceDist... commit | commitdiff | tree | snapshot
2021-02-05 gmungocJAL-2422 updated unit test for ChimeraX command change Develop-2_11_2_0-d20210205 commit | commitdiff | tree | snapshot
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3796_notarization_no_uninstaller... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalvie... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization_... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Smaller DMG Finder windows for all DS_Store... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 New DS_Store for smaller DMG Finder window commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Remove Uninstall Old Jalview.app in Release_2_... commit | commitdiff | tree | snapshot
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update signature for uninstaller on OSX commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update to Install4j 8.0.10 and add config... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3783 Reverting to using groovy-all-2.4.12-indy... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3628 Test for doubly saved single backup file scheme commit | commitdiff | tree | snapshot
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