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jalview.git
2021-09-02 Ben SoaresJAL-3851 re-engineering endpoints as separate classes commit | commitdiff | tree | snapshot
2021-09-02 Ben SoaresJAL-3851 run the eclipse compiled jalview commit | commitdiff | tree | snapshot
2021-09-02 Ben SoaresJAL-3851 API handling of rest calls commit | commitdiff | tree | snapshot
2021-09-02 Ben SoaresJAL-3851 convenience methods for logging exceptions commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 fixed full class name commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 using reflection for SimpleHttpFileServerFactory commit | commitdiff | tree | snapshot
2021-06-18 Ben SoaresJAL-3594 Updated the Jalview Develop getdown splashscre... commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 commit | commitdiff | tree | snapshot
2021-06-09 Jim Procterfixes JAL-3840 commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows commit | commitdiff | tree | snapshot
2021-06-08 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_macOS_... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3248 Moved old README to doc/old_README and put... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3743 JAL-3745 Fixed NullPointerExceptions happening... commit | commitdiff | tree | snapshot
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... commit | commitdiff | tree | snapshot
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... commit | commitdiff | tree | snapshot
2021-04-13 Ben SoaresJAL-3830 Improved jalview.bat to find either pwsh.exe... commit | commitdiff | tree | snapshot
2021-03-31 Ben SoaresJAL-3830 BAT file wrapper around powershell, so jalview... commit | commitdiff | tree | snapshot
2021-03-30 Ben SoaresJAL-3830 Follow all SymbolicLinks in Windows powershell... commit | commitdiff | tree | snapshot
2021-03-26 Ben SoaresJAL-3830 delete channel.props and channel.propsv when... commit | commitdiff | tree | snapshot
2021-03-24 Ben SoaresJAL-3830 Moved wrappers to bin/jalview.* and make a... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Allow paths to start with '~'. Make path check... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Now using a single universal bash script ... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 add the windows bash script to getdown files... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 bash script that works in both cygwin and... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 Delete wrapper scripts and getdown *v files... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 powershell wrapper tested on linux, macos... commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 minor fix in powershell wrapper commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 powershell follows symlinks as they do exist... commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 Powershell wrapper now works cross-platform... commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 Make wrapper scripts executable commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 powershell wrapper tested and fixed commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 improved bash scripts. Added powershell script... commit | commitdiff | tree | snapshot
2021-03-12 Ben SoaresJAL-3830 unix and macos wrappers. Symbolic link to... commit | commitdiff | tree | snapshot
2021-03-11 Ben SoaresJAL-3830 Improved for .app dir name with spaces, e... commit | commitdiff | tree | snapshot
2021-03-10 Ben SoaresJAL-3830 install4j adds script to Jalview.app/Contents... commit | commitdiff | tree | snapshot
2021-03-10 Ben SoaresJAL-3830 first draft of wrapper script to go in macOS... commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... Merge branch 'task/JAL-3796_notarization' into develop commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization commit | commitdiff | tree | snapshot
2021-03-05 Jalview Development... JAL-3796 minimal steps for notarization and the entitle... commit | commitdiff | tree | snapshot
2021-03-05 Ben SoaresJAL-3618 Enable appBundleIsTraversable in JFileChooser... commit | commitdiff | tree | snapshot
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... commit | commitdiff | tree | snapshot
2021-02-18 gmungocJAL-3822 pass panel height and width to wrapped geometr... commit | commitdiff | tree | snapshot
2021-02-18 gmungocJAL-2422 remove temporary patch (requires ChimeraX... commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3521 Changed wording of INSTALLATION in source... commit | commitdiff | tree | snapshot
2021-02-08 Ben SoaresJAL-3521 Adding a build_properties into sourceDist... commit | commitdiff | tree | snapshot
2021-02-05 gmungocJAL-2422 updated unit test for ChimeraX command change Develop-2_11_2_0-d20210205 commit | commitdiff | tree | snapshot
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3796_notarization_no_uninstaller... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalvie... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization_... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Smaller DMG Finder windows for all DS_Store... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 New DS_Store for smaller DMG Finder window commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Remove Uninstall Old Jalview.app in Release_2_... commit | commitdiff | tree | snapshot
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update signature for uninstaller on OSX commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update to Install4j 8.0.10 and add config... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3783 Reverting to using groovy-all-2.4.12-indy... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3628 Test for doubly saved single backup file scheme commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to describe -PCHANNEL... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to reflect change of name... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Better Jalview Develop banner commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Documentation added to building.md for using... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Improved About banners for develop and test... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Images for splash screen commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 Change main window title commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 DMG fixes commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3754 fixed a problem with jar task creating a stray... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3775 added the Platform.isLinux() check for test... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Generating GIMP XCF files for getdown and... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Release images and channel properties commit | commitdiff | tree | snapshot
2020-12-03 Ben SoaresJAL-3594 New way for build.gradle to override propertie... commit | commitdiff | tree | snapshot
2020-12-02 Ben SoaresJAL-3594 new logos, icons and cosmetics for getdown... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3594 Different icon/getdown styling when launching... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresMerge branch 'develop' into merge/develop_and_rebase_sq... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Updated getdown with re-factored... commit | commitdiff | tree | snapshot
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