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jalview.git
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig... commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper commit | commitdiff | tree | snapshot
2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 update spike to latest commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_CO... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 refactor conversion of table data to beans... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array... commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2808 update conditions list on change of attribute... commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) commit | commitdiff | tree | snapshot
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters... commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2069 renamed helper method better commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2808 defer dispose to allow screen location to... commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2069 Javadoc added only commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-1424 enhanced to report dynamic keys separately commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy release notes and whats new commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 source code licencing commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy up release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2466 revised help text for sort by PID commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 what’s new and release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2822 known defect for 2.10.3 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2841 JAL-2791 new known defect

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2017-11-17 Jim ProcterJAL-2541 known defect commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2684 clarify release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2840 release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop commit | commitdiff | tree | snapshot
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation... commit | commitdiff | tree | snapshot
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2811 release note commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2541 not in 2.10.3, JAL-2831 signed off. commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 11th hour release today commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop commit | commitdiff | tree | snapshot
2017-11-17 gmungocJAL-2808 set (read-only) condition text field as disabled commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterJAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release... commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2069 fix minor bugs in variable setting commit | commitdiff | tree | snapshot
2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour... commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2835 update test for array-valued attribute name commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute' commit | commitdiff | tree | snapshot
2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region commit | commitdiff | tree | snapshot
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode... commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 spike updated with latest commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match... commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 code tidy (generic type constructors) commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2069 dialog title now 'Variable colour' commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 add filters for VCF/VEP 'fields of interest' commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-1270 add missing "Functional" to tests commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2831 ported to applet commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 tidies and tests commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 tidy commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context... commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Missed commit commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode commit | commitdiff | tree | snapshot
2017-11-14 Jim ProcterJAL-2758 update uniprot retrieval test commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 commit | commitdiff | tree | snapshot
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