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jalview.git
2017-04-20 tcofoegbuJAL-1648 refactored and improved caching architecture... commit | commitdiff | tree | snapshot
2017-04-11 tcofoegbuJAL-1648 Fix review issue - remove usage of String... commit | commitdiff | tree | snapshot
2017-04-11 tcofoegbuJAL-1648 minor house keeping commit | commitdiff | tree | snapshot
2017-04-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-04-03 tcofoegbuJAL-1648 Added improvement to persist cache items to... commit | commitdiff | tree | snapshot
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461 commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added commit | commitdiff | tree | snapshot
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 code and help tidy for review comments commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... commit | commitdiff | tree | snapshot
2017-03-23 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full... commit | commitdiff | tree | snapshot
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota... commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch bug/JAL-2436featureRendererThreading commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate... commit | commitdiff | tree | snapshot
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2306 assert no DAS sources commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer commit | commitdiff | tree | snapshot
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... commit | commitdiff | tree | snapshot
2017-03-20 kiramtJAL-2388 Comment typo commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 ViewportRanges unit test commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute... commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterJAL-1933 refactor parameter for code clarity commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Unit test update commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applet update for overview panel commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split... commit | commitdiff | tree | snapshot
2017-03-15 kiramtJAL-2388 Unit tests and tidies commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 corrected getFeatureRenderer() commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2442 applet feature transparency also on overview... commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed' commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat... commit | commitdiff | tree | snapshot
2017-03-15 gmungocMerge branch 'develop' into bug/JAL-2436featureRenderer... commit | commitdiff | tree | snapshot
2017-03-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 Working overview panel commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit tests for FeatureColourFinder (transparen... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 corrected handling of default colour commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further... commit | commitdiff | tree | snapshot
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Additional unit tests commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Missed commit commit | commitdiff | tree | snapshot
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Messed something up, merged conflicts commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Dependency tidy commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Reverted to previous commit | commitdiff | tree | snapshot
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations... commit | commitdiff | tree | snapshot
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Minor refactoring commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Unit tests take 2 commit | commitdiff | tree | snapshot
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1 commit | commitdiff | tree | snapshot
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