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jalview.git
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 add isContactFeature commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping commit | commitdiff | tree | snapshot
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... commit | commitdiff | tree | snapshot
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Made test timeout slightly longer bug/JAL-2309 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Adjusted timeout on headless tests commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2280 Updated spanish translation as recommended... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 updated method calls commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 another test case commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1805 groups=Functional added where missing commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2318 updated help text commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Unit test for utility method for comparing... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Better check for existing url links commit | commitdiff | tree | snapshot
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Updated warn.url_must_contain commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already... commit | commitdiff | tree | snapshot
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308 commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... commit | commitdiff | tree | snapshot
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Minor unit test addition commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Unit test updates commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Refactor applet too commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated and checked messages, English and... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated help documentation commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 ProfileI interface for Profile commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 test updated for percentage rounded commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Code tidy commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 URLLink unit tests updated commit | commitdiff | tree | snapshot
2016-11-01 gmungocConservation now using ResidueCount; tests added commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 typo in javadoc commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 simplified repeat() method commit | commitdiff | tree | snapshot
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Merge commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... commit | commitdiff | tree | snapshot
2016-10-31 gmungocJAL-98 round when formatting dec places commit | commitdiff | tree | snapshot
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... commit | commitdiff | tree | snapshot
2016-10-31 kiramtUpdated messages. commit | commitdiff | tree | snapshot
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource spikes/geoff spikes/jpred commit | commitdiff | tree | snapshot
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association... commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils commit | commitdiff | tree | snapshot
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog commit | commitdiff | tree | snapshot
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2286 modal residue check + commenting commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... commit | commitdiff | tree | snapshot
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via... commit | commitdiff | tree | snapshot
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-2286 use constant for fixed colours commit | commitdiff | tree | snapshot
2016-10-25 gmungocJAL-98 javadoc corrected commit | commitdiff | tree | snapshot
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