jalview.git
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-07 Jim ProcterJAL-2192 TODO
2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and...
2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant...
2016-09-07 Jim ProcterJAL-1803 transfer mapped chain’s PDBEntry to the *datas...
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed
2016-09-07 Jim ProcterJAL-1803 first pass at updatePDBEntry
2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert
2016-09-07 gmungocJAL-2164 fix failing test
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-09-06 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
2016-09-05 Jim ProcterJAL-1563 UniProt FTS doc revisions
2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for
2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for
2016-09-05 Jim ProcterJAL-2089 update Uniprot to UniProt in help docs.
2016-09-05 Jim ProcterJAL-2089 drop MCView documentation from contents.
2016-09-05 gmungocJAL-2154 made Java 7 compatible
2016-09-05 gmungocJAL-2106 increased coverage for testGetPrimaryDbRefs
2016-09-05 Jim ProcterJAL-1919 revised mmCIF documentation
2016-09-05 Jim ProcterJAL-2089 bump release date for 2.10
2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
2016-09-04 Jim ProcterJAL-1919 preserve filename on restore of project so...
2016-09-04 Jim ProcterJAL-1803 JAL-2106 patch tests for tighter PDB Primary...
2016-09-04 Jim ProcterJAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade...
2016-09-04 Jim ProcterJAL-1803 recover type field faithfully for mmCIF/PDB...
2016-09-04 Jim ProcterJAL-1803 restore property array for a sequence’s associ...
2016-09-04 Jim ProcterJAL-1803 chainCode moved onto property hashtable as...
2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always...
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
2016-09-01 gmungocJAL-2077 don't mess with the look and feel
2016-09-01 gmungocJAL-2077 less drastic exit on close
2016-09-01 Jim ProcterJAL-2034 - remember to reset needsOverviewUpdate at...
2016-09-01 gmungocJAL-2077 test harness for inspecting mouse events
2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui
2016-09-01 gmungocJAL-2077 do nothing in mousePressed if right button...
2016-09-01 gmungocJAL-2077 force defer right-click handling to mouseRelea...
2016-09-01 Jim ProcterJAL-1803 JAL-2188 experimental:
2016-08-31 Jim ProcterJAL-1926 JAL-2106 source DB refs come from SequenceI...
2016-08-31 Jim ProcterJAL-1926 JAL-2106 resolve source DB refs using canonica...
2016-08-31 Jim ProcterJAL-1926 JAL-2106 fix PDB primary DBRef semantics:...
2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseC...
2016-08-31 gmungocJAL-2077 more javadoc
2016-08-31 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-08-31 Jim ProcterJAL-2157 JAL-2154 simplify CanshowProducts code to...
2016-08-31 Jim ProcterJAL-2034 fix logic so recalcConservation(true) returns...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-08-31 Jim ProcterJAL-2034 remove todo - answer is yes!
2016-08-31 gmungocJAL-2077 check for isPopupTrigger() in mousePressed...
2016-08-31 tcofoegbuJAL-2148 further enhancment to CA HETATM processing
2016-08-31 gmungocJAL-1670 repositioned feature for backwards compatibili...
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p... merge/develop_bug/JAL-2154projectMappings
2016-08-30 Jim ProcterJAL-2154 doc & AssertError trap for known failure case...
2016-08-30 Jim ProcterJAL-2154 always compare canonicalised DBRefEntry source...
2016-08-30 Jim ProcterJAL-2154 simplify expression
2016-08-30 gmungocJAL-2183 defensive check for openFrameCount < 0 (should...
2016-08-30 gmungocJAL-2183 simplified database tree actionPerformed,...
2016-08-30 gmungocJAL-2183 revised change (= no change)
2016-08-30 gmungocJAL-2183 formatter added @Override (only)
2016-08-30 gmungocJAL-2183 removed redundant (overriden) add panel to...
2016-08-30 Jim ProcterJAL-2154 javadoc, fix underloaded version of assertData...
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p...
2016-08-29 Jim ProcterJAL-2154 don’t synthesise multiple CDS|<Acc> sequences...
2016-08-29 Jim ProcterJAL-2154 filter out dbrefs that already match primary...
2016-08-29 Jim ProcterJAL-2154 refactor if (for easier breakpoint) and formatting
2016-08-29 Jim ProcterJAL-2154 canonical dbsources are lowercased before...
2016-08-29 Jim ProcterJAL-2154 ENA specific Ensembl canonical db prefixes
2016-08-29 Jim ProcterJAL-2154 endless loop fixed (hopefully :) )
2016-08-29 gmungocJAL-1854 tweaks to rules and README
2016-08-29 Jim ProcterJAL-2154 catch insertion of duplicate CDS after retriev...
2016-08-29 Jim ProcterJAL-2154 Optional message parameter for assertDatasetNo...
2016-08-29 Jim ProcterJAL-2154 new assertDatasetIsNormalised to trivially...
2016-08-29 Jim ProcterJAL-2154 additional test that removing a duplicate...
2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to...
2016-08-29 gmungocMerge branch 'bug/JAL-1841rnaSecStr' into develop
2016-08-29 gmungocJAL-1448 updated unit test for last change
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr
2016-08-29 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-26 gmungocJAL-1854 two more rules, readme notes
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB...
2016-08-26 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into merge...
2016-08-26 Jim ProcterJAL-2106 fix (last one!) remove the Sequence.sourceDBRe... bug/JAL-2154projectMappings
2016-08-26 Jim ProcterJAL-2154 ENSEMBL and Uniprot tests
2016-08-26 Jim ProcterJAL-2154 report any db fetch failures as a fail at end
2016-08-26 Jim ProcterJAL-2154 ensure pass increments actually result in...
2016-08-26 Jim ProcterJAL-2154 catch and report a failures when xrefed projec...
2016-08-26 Jim ProcterJAL-2154 check that xref is a coding xref before adding...
2016-08-26 Jim ProcterJAL-2154 don’t add any remaining xrefed sequences of...
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-26 gmungocJAL-1854 commented FallThrough rule
2016-08-26 gmungocJAL-1854 corrected nested package rule
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ...
2016-08-26 Jim ProcterJAL-2154 drop PDB from Protein db list to remove from...
2016-08-26 Jim ProcterJAL-2154 Defer failing cross-ref combinations that...
2016-08-26 Jim ProcterJAL-2154 check that CDS panel is only nucleotide, and...
2016-08-26 gmungocJAL-1854 comment switch case fallthrough
2016-08-25 Jim ProcterJAL-2106 JAL-2154 fix test for additional reference...
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