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jalview.git
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3685 Fixed single quotes in formatMessage messages commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-07-02 Ben SoaresJAL-3676 code review -- added non-listed Level into... commit | commitdiff | tree | snapshot
2020-06-30 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... commit | commitdiff | tree | snapshot
2020-06-24 Ben SoaresJAL-3667 Fixed single backupfile error deleting the... commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-06-15 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... commit | commitdiff | tree | snapshot
2020-06-08 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3613 remove debug code committed in error commit | commitdiff | tree | snapshot
2020-05-01 gmungocMerge branch 'bug/JAL-3613emblCDSTracking' into release... commit | commitdiff | tree | snapshot
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... commit | commitdiff | tree | snapshot
2020-04-22 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... Release_2_11_1_0 commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report... commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-367 code tidy commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide commit | commitdiff | tree | snapshot
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f... commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 change redacted commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... commit | commitdiff | tree | snapshot
2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program... commit | commitdiff | tree | snapshot
2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for... testing/JAL-3577_jalviewversion_autoset_fixed commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background... task/JAL-3577_Jalview_Test_installers commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEA... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu... commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 removed debugging commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names commit | commitdiff | tree | snapshot
2020-04-02 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdow... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterJAL-3407 basic doc for releasing jalview - will be... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterJAL-3407 updated release date to 2nd April, and first... commit | commitdiff | tree | snapshot
2020-03-31 gmungocJAL-1889 better (?) wait for Conservation thread commit | commitdiff | tree | snapshot
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