jalview.git
2015-03-13 gmungocJAL-1684 allow X in protein to map to untranslatable...
2015-03-13 gmungocJAL-1685 fixed
2015-03-12 gmungocJAL-1544 sequece now sequence
2015-03-11 gmungocJAL-1684 better window size parameters; match up sequen...
2015-03-11 gmungocJAL-1684 fix bug in AlignmentView constructor
2015-03-11 gmungocJAL-1684 include JMOL jar for applet
2015-03-11 gmungocJAL-1684 fix jars list, parameters for new example
2015-03-11 gmungocJAL-845 start cDNA consensus on 'add alignment' (as...
2015-03-11 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-03-11 gmungocJAL-1685 further tests features/JAL-845splitPaneMergeDevelop
2015-03-11 gmungocJAL-845 smarter test for 'mappability' when adding...
2015-03-11 gmungocJAL-1421 changed Vector to List<String> for protein...
2015-03-11 gmungocJAL-1685 tests added for ambiguity codes (including...
2015-03-11 gmungocJAL-845 cDNA mapping: select on sequence translation...
2015-03-11 gmungocJAL-845 handle no profile without NPE!
2015-03-11 gmungocJAL-1684 applet example for SplitFrame view of cDNA...
2015-03-10 gmungocJAL-1680 group consensus speeded up with a different...
2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ...
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into develop
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to...
2015-03-06 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop...
2015-03-06 Jim ProcterMerge branch 'develop' into features/JAL-845splitPaneMe...
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim Procterreassign features already created/documented for 2...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7...
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath...
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
2015-03-05 gmungocMerge branch 'develop' into features/JAL-845splitPaneMe...
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources bug/JAL-1643_File-chooser-improvement
2015-03-05 gmungocJAL-845 minor tidy / tests / javadoc tweaks
2015-03-05 gmungocJAL-1270 tests added
2015-03-04 gmungocJAL-845 bug fixes correcting linked editing
2015-03-03 gmungocJAL-845 refactor / typo fix
2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA...
2015-03-03 gmungocJAL-1452 nucleotide/protein default colour; JAL-845...
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into...
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
2015-02-27 Jim Procterfix for JAL-1678
2015-02-27 gmungocJAL-1452 distinct colour preferences for nucleotide...
2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after alignin...
2015-02-25 gmungocJAL-1677 commenting use of AlignViewport.gatherViewsHere
2015-02-24 gmungocJAL-1677 Castor source changes
2015-02-24 gmungocJAL-845 set top and bottom seq id widths the same
2015-02-24 gmungocJAL-1677 save/restore SplitFrame to Jalview project
2015-02-23 gmungocJAL-845 repaint of complementary selection (applet)
2015-02-23 gmungocJAL-1619 split frame now offered in applet 'input from...
2015-02-20 gmungocJAL-1673 additional test (and trim of PDB resnum value)
2015-02-20 gmungocJAL-1675 correct highlighting in Chimera for mouseover...
2015-02-20 gmungocJAL-1665 create dataset sequences in applet
2015-02-20 gmungocJAL-1674 update both status bars when mousing over...
2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull...
2015-02-13 gmungocJAL-845 first rough applet SplitFrame (add parameter...
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes
2015-02-12 Jim ProcterJAL-1350 document changed behaviour
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected...
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using...
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup
2015-02-12 Jim ProcterJAL-1115 typecast
2015-02-12 Jim Procterjavadoc
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
2015-02-12 gmungocJAL-1633 set file format on 'translate cDNA'
2015-02-12 gmungocMerge remote-tracking branch 'origin/merge/JAL-845_JAL...
2015-02-11 gmungocJAL-845 handling eXpand/Gather split frame views
2015-02-11 gmungocJAL-1264 button labels (for panel currently not linked...
2015-02-11 Jim ProcterJAL-1655 JAL-845 special support to set column width...
2015-02-11 Jim ProcterJAL-845 avoid OOBException when method is called with...
2015-02-11 Jim ProcterJAL-969 use AlignViewportI interface instance where...
2015-02-11 Jim ProcterJAL-1654 allow font to be specified without modifying...
2015-02-10 Jim Procternote about preserving/reinstating custom grid geometry...
2015-02-10 Jim ProcterJAL-1640 make font-size changes modify grid size again
2015-02-10 Jim ProcterJAL-845 - portability patch - workaround for lastToken...
2015-02-10 Jim Procteradded comment to @gmungoc todo about referencing PDB...
2015-02-10 Jim ProcterJAL-845 @mungoc TODO comments - addAlignment needs...
2015-02-10 Jim ProcterJAL-1382 slightly more efficient detection of non-gap...
2015-02-10 Jim ProcterJAL-1382 @mungo TODO done: use StringUtils for delete...
2015-02-10 Jim ProcterJAL-966 @mungo TODO complete: List rather than bare...
2015-02-10 gmungocJAL-1264 unit tests fixed (have to explicit set annotat...
2015-02-09 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop...
2015-02-09 Jim ProcterMerge branch 'develop' into JAL-1640_stylesettings
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into
2015-02-06 gmungocJAL-845 further code/tests/refactoring
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-02-06 Jim ProcterJAL-1640 new menu allowing view settings to be transfer...
2015-02-06 Jim ProcterJAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp...
2015-02-06 Jim ProcterJAL-1551 formatting
2015-02-06 Jim ProcterJAL-1640 more properties moved to style bean and ration...
2015-02-06 Jim ProcterJAL-1551 formatting
2015-02-06 Jim ProcterJAL-1640 JAL-966 is for boolean getter on AlignViewportI
2015-02-05 Charles Ofoegbumerge commit
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL...
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
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