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jalview.git
2015-03-11 gmungocJAL-1685 tests added for ambiguity codes (including... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 cDNA mapping: select on sequence translation... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 handle no profile without NPE! commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 applet example for SplitFrame view of cDNA... commit | commitdiff | tree | snapshot
2015-03-10 gmungocJAL-1680 group consensus speeded up with a different... commit | commitdiff | tree | snapshot
2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ... commit | commitdiff | tree | snapshot
2015-03-05 gmungocMerge branch 'develop' into features/JAL-845splitPaneMe... commit | commitdiff | tree | snapshot
2015-03-05 gmungocJAL-845 minor tidy / tests / javadoc tweaks commit | commitdiff | tree | snapshot
2015-03-05 gmungocJAL-1270 tests added commit | commitdiff | tree | snapshot
2015-03-04 gmungocJAL-845 bug fixes correcting linked editing commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-845 refactor / typo fix commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA... commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-1452 nucleotide/protein default colour; JAL-845... commit | commitdiff | tree | snapshot
2015-02-27 gmungocJAL-1452 distinct colour preferences for nucleotide... commit | commitdiff | tree | snapshot
2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after alignin... commit | commitdiff | tree | snapshot
2015-02-25 gmungocJAL-1677 commenting use of AlignViewport.gatherViewsHere commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-1677 Castor source changes commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-845 set top and bottom seq id widths the same commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-1677 save/restore SplitFrame to Jalview project commit | commitdiff | tree | snapshot
2015-02-23 gmungocJAL-845 repaint of complementary selection (applet) commit | commitdiff | tree | snapshot
2015-02-23 gmungocJAL-1619 split frame now offered in applet 'input from... commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1673 additional test (and trim of PDB resnum value) commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1675 correct highlighting in Chimera for mouseover... commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1665 create dataset sequences in applet commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1674 update both status bars when mousing over... commit | commitdiff | tree | snapshot
2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull... commit | commitdiff | tree | snapshot
2015-02-13 gmungocJAL-845 first rough applet SplitFrame (add parameter... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 document changed behaviour commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 typecast commit | commitdiff | tree | snapshot
2015-02-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... commit | commitdiff | tree | snapshot
2015-02-12 gmungocJAL-1633 set file format on 'translate cDNA' commit | commitdiff | tree | snapshot
2015-02-12 gmungocMerge remote-tracking branch 'origin/merge/JAL-845_JAL... commit | commitdiff | tree | snapshot
2015-02-11 gmungocJAL-845 handling eXpand/Gather split frame views commit | commitdiff | tree | snapshot
2015-02-11 gmungocJAL-1264 button labels (for panel currently not linked... commit | commitdiff | tree | snapshot
2015-02-11 Jim ProcterJAL-1655 JAL-845 special support to set column width... commit | commitdiff | tree | snapshot
2015-02-11 Jim ProcterJAL-845 avoid OOBException when method is called with... commit | commitdiff | tree | snapshot
2015-02-11 Jim ProcterJAL-969 use AlignViewportI interface instance where... commit | commitdiff | tree | snapshot
2015-02-11 Jim ProcterJAL-1654 allow font to be specified without modifying... commit | commitdiff | tree | snapshot
2015-02-10 Jim Procternote about preserving/reinstating custom grid geometry... commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-1640 make font-size changes modify grid size again commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-845 - portability patch - workaround for lastToken... commit | commitdiff | tree | snapshot
2015-02-10 Jim Procteradded comment to @gmungoc todo about referencing PDB... commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-845 @mungoc TODO comments - addAlignment needs... commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-1382 slightly more efficient detection of non-gap... commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-1382 @mungo TODO done: use StringUtils for delete... commit | commitdiff | tree | snapshot
2015-02-10 Jim ProcterJAL-966 @mungo TODO complete: List rather than bare... commit | commitdiff | tree | snapshot
2015-02-10 gmungocJAL-1264 unit tests fixed (have to explicit set annotat... commit | commitdiff | tree | snapshot
2015-02-09 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop... commit | commitdiff | tree | snapshot
2015-02-09 Jim ProcterMerge branch 'develop' into JAL-1640_stylesettings commit | commitdiff | tree | snapshot
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2015-02-06 gmungocJAL-845 further code/tests/refactoring commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1640 new menu allowing view settings to be transfer... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1640 more properties moved to style bean and ration... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterJAL-1640 JAL-966 is for boolean getter on AlignViewportI commit | commitdiff | tree | snapshot
2015-02-05 Charles Ofoegbumerge commit commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... commit | commitdiff | tree | snapshot
2015-02-03 gmungoccomment only commit | commitdiff | tree | snapshot
2015-02-03 gmungocJAL-845 column mapping speed-up commit | commitdiff | tree | snapshot
2015-02-03 gmungocJAL-845 SplitFrame key bindings delegation to AlignFram... commit | commitdiff | tree | snapshot
2015-02-03 gmungocJAL-845 preparation for awareness of AlignFrame in... commit | commitdiff | tree | snapshot
2015-02-03 gmungocJAL-845 redundant 'map to self' removed from buildSearc... commit | commitdiff | tree | snapshot
2015-02-03 gmungocComments added commit | commitdiff | tree | snapshot
2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 added null check for sequence description... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 setStyle method and associated tests (required... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-966 allow access to viewport interface from alignPanel commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 getters and setters for viewStyleI - note... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 copy constructor test and implementation by... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-715 tweaks for SRBS description string parsing commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1161 JAL-1606 note about awt/swing dependency in... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge commit commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 JAL-1551 formatting/imports/remove dead code commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 updates to use get/setter on viewportI: effici... commit | commitdiff | tree | snapshot
2015-02-02 Jim ProcterJAL-1640 separated style operations into a new ViewStyl... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 improvment of finder logic to include the... commit | commitdiff | tree | snapshot
2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing commit | commitdiff | tree | snapshot
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... commit | commitdiff | tree | snapshot
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR... commit | commitdiff | tree | snapshot
2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature... commit | commitdiff | tree | snapshot
2015-01-27 gmungocJAL-1588 new class renamed commit | commitdiff | tree | snapshot
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... commit | commitdiff | tree | snapshot
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) commit | commitdiff | tree | snapshot
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