jalview.git
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
2015-09-11 Jim ProcterJAL-1884 add the JNLP template to jalview_jnlp_vm.jar
2015-09-10 Jim ProcterJAL-1645 fix broken link in docs
2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no...
2015-09-10 Jim ProcterJAL-1645 licencing for help html
2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the...
2015-09-10 Jim ProcterJAL-1645 add reference seq docs to index/etc
2015-09-10 Jim ProcterJAL-1645 formatting and updated release date
2015-09-10 Jim ProcterJAL-1645 formatting
2015-09-10 Jim ProcterJAL-736 JAL-1645 brief documentation about physicochemi...
2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-10 Jim ProcterJAL-1645 typo
2015-09-10 Jim ProcterJAL-1645 JAL-1595 sort by RNA helices docs
2015-09-10 Jim ProcterJAL-1645 more cross-links and fixing menu entries
2015-09-10 Jim ProcterJAL-1645 links from whats New page
2015-09-10 Jim ProcterJAL-1645 yet more documentation tweaks
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence...
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
2015-09-09 Jim ProcterJAL-1645 rejig annotation selection dialog box
2015-09-09 Jim ProcterJAL-1645 rejig biojson/biojsmsa docs
2015-09-09 Jim ProcterJAL-1645 documentation tweaks
2015-09-09 Jim ProcterJAL-1645 rejig bioJSON, export and whats new
2015-09-09 Jim ProcterJAL-1645 relocate developer info about BioJS MSA templa...
2015-09-09 Jim ProcterJAL-1645 update 2.9 docs
2015-09-09 Jim ProcterJAL-1645 JAL-1667 revised PDB sequence fetcher docs
2015-09-09 Jim ProcterJAL-1645 update TOC for 2.9 what’s new
2015-09-09 Jim ProcterJAL-1645 update release note link to v2.9
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis
2015-09-09 gmungocJAL-857 added debug output to track down document base...
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for...
2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used...
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen...
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped...
2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs
2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarit...
2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based...
2015-09-09 tcofoegbuhouse keeping
2015-09-09 tcofoegbuupdated Biojs msa help doc
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuJAL-1541 doc for biojs msa
2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1645 defictionalising release notes
2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new”
2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a...
2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true...
2015-09-08 tcofoegbuupdated biojson help content
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuupdated helpTOC to include recently added features...
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs)
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo...
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuupdated help to include BioJS option in export.html
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1551 crlf change
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change...
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1645 draft release notes for v2.9...
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar!
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols...
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbudeleted jbake example directory and the old biojs templ...
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-07 tcofoegbumerge
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef...
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
2015-09-07 Jim ProcterJAL-1522 report commit id and branch in installation...
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the...
2015-09-07 Jim ProcterJAL-1701 added links to example files. will probably...
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in...
2015-09-06 Jim ProcterJAL-1368 JAL-1863 JAL-1304 reformatting and revision...
2015-09-06 Jim ProcterJAL-1368 JAL-1628 revise documentation in line with...
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour...
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