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jalview.git
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera... commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 parse Chimera atomspec to AtomSpec commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added... commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... commit | commitdiff | tree | snapshot
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-1270 corrected command-line args commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 set finishedInit to false before checking... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 sorted properties for readability commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) ! commit | commitdiff | tree | snapshot
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of... commit | commitdiff | tree | snapshot
2016-11-09 gmungocJAL-2295 set attributes commands include feature value... commit | commitdiff | tree | snapshot
2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2 commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 method added to return a compact mapped range... commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Made test timeout slightly longer bug/JAL-2309 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Adjusted timeout on headless tests commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 make RangeComparator a top level class for... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 updated method calls commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... commit | commitdiff | tree | snapshot
2016-11-07 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 another test case commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-1805 groups=Functional added where missing commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2318 updated help text commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2295 handle no progress bar message properly commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2295 small tidy of javadoc only commit | commitdiff | tree | snapshot
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... commit | commitdiff | tree | snapshot
2016-11-04 tcofoegbuJAL-2292 Unit test for utility method for comparing... commit | commitdiff | tree | snapshot
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Better check for existing url links commit | commitdiff | tree | snapshot
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet commit | commitdiff | tree | snapshot
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 Updated warn.url_must_contain commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already... commit | commitdiff | tree | snapshot
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308 commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... commit | commitdiff | tree | snapshot
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case... commit | commitdiff | tree | snapshot
2016-11-03 kiramtJAL-2281 Minor unit test addition commit | commitdiff | tree | snapshot
2016-11-03 gmungocJAL-2295 step 1 new menu item to transfer Jalview attri... commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Unit test updates commit | commitdiff | tree | snapshot
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Refactor applet too commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated and checked messages, English and... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Updated help documentation commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 ProfileI interface for Profile commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 test updated for percentage rounded commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... commit | commitdiff | tree | snapshot
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Code tidy commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... commit | commitdiff | tree | snapshot
2016-11-02 kiramtJAL-2282 URLLink unit tests updated commit | commitdiff | tree | snapshot
2016-11-01 gmungocConservation now using ResidueCount; tests added commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 typo in javadoc commit | commitdiff | tree | snapshot
2016-11-01 gmungocJAL-98 simplified repeat() method commit | commitdiff | tree | snapshot
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Merge commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code commit | commitdiff | tree | snapshot
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... commit | commitdiff | tree | snapshot
2016-10-31 gmungocJAL-98 round when formatting dec places commit | commitdiff | tree | snapshot
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... commit | commitdiff | tree | snapshot
2016-10-31 kiramtUpdated messages. commit | commitdiff | tree | snapshot
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... commit | commitdiff | tree | snapshot
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