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jalview.git
2012-05-08 jproctergroovy tools update Tcoffee_JAL-1065 commit | commitdiff | tree | snapshot
2012-05-04 jprocterMerge branch 'test_paolo_JAL-1065' into Tcoffee_JAL... commit | commitdiff | tree | snapshot
2012-05-04 jprocterscrubbed classpath. again. commit | commitdiff | tree | snapshot
2012-05-04 jprocterjavadoc commit | commitdiff | tree | snapshot
2012-05-04 jprocterJAL-1065 JAL-1066 - refactored tcoffee score-> jalview... commit | commitdiff | tree | snapshot
2012-05-04 jprocterJAL-1065 JAL-1066 generic 'annotation collection update... commit | commitdiff | tree | snapshot
2012-05-04 jprocterJAL-1065 JAL-1066 - use direct object reference rather... commit | commitdiff | tree | snapshot
2012-05-04 jprocterJAL-1066 JAL-968 common interface for objects that... commit | commitdiff | tree | snapshot
2012-04-10 Paolo Di TommasoJAL-1065 + JAL-1066 + JAL-1067 - Added T-Coffee score... commit | commitdiff | tree | snapshot
2012-04-10 jprocterMerge branch 'Tcoffee_JAL-1065' of https://source.jalvi... commit | commitdiff | tree | snapshot
2012-04-09 Paolo Di TommasoJAL-1065 - Visualize T-Coffee quality scores for an... commit | commitdiff | tree | snapshot
2012-04-09 Paolo Di TommasoJAL-1066 - T-Coffee color scheme + signature change... commit | commitdiff | tree | snapshot
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file reader commit | commitdiff | tree | snapshot
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file parser commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence... commit | commitdiff | tree | snapshot
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map... commit | commitdiff | tree | snapshot
2012-02-12 Jim ProcterJAL-715 - remove platform dependent includes commit | commitdiff | tree | snapshot
2012-01-11 jprocterMerge branch 'JAL-1023_viewall2structsw7' into Release_... commit | commitdiff | tree | snapshot
2012-01-11 jprocterremoved empty lines and fields in manifest like: commit | commitdiff | tree | snapshot
2011-12-08 jprocter(JAL-1023) ensure filename is properly escaped before... commit | commitdiff | tree | snapshot
2011-12-08 jprocterremove commented lines commit | commitdiff | tree | snapshot
2011-12-08 jproctersimple escape utility class for JAL-1023 patch commit | commitdiff | tree | snapshot
2011-11-21 jprocterMerge branch 'JAL-368_dragabovedesktop' into Release_2_... commit | commitdiff | tree | snapshot
2011-11-21 jprocter(JAL-368) ensure window never gets a negative Y coordin... commit | commitdiff | tree | snapshot
2011-11-20 jprocterMerge branch 'patch_JAL-1004' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-20 jprocter(JAL-1004) add mouse listener to internal panel commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-986) rendering to imageMap counts as rendering... commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) documentation and tooltips commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) allow different ID margin calculation... commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) preference widgets for settings commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-986) getter for integer user preference properties commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-980) jmol classpath patch commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'Release_2_7_branch' commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) patch netbeans and installAnywhere builds commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built... commit | commitdiff | tree | snapshot
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... commit | commitdiff | tree | snapshot
2011-10-03 jprocterMerge branch 'Release_2_7_Branch' commit | commitdiff | tree | snapshot
2011-10-03 jprocterredact previous commit - fileassociation tag not allowe... commit | commitdiff | tree | snapshot
2011-10-03 jprocterremoved unnecessary parameters and changed alignment... commit | commitdiff | tree | snapshot
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948) commit | commitdiff | tree | snapshot
2011-09-28 jprocterMerge branch 'Release_2_7_Branch' Release_2_7 commit | commitdiff | tree | snapshot
2011-09-28 jprocterjnlps with and without file associations for default... commit | commitdiff | tree | snapshot
2011-09-28 jprocterbroken link. rearranged opening pg commit | commitdiff | tree | snapshot
2011-09-27 jproctertypo commit | commitdiff | tree | snapshot
2011-09-27 jprocterswitch to git release building commit | commitdiff | tree | snapshot
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724 commit | commitdiff | tree | snapshot
2011-09-27 jprocterensure server errors return a URL and response document... commit | commitdiff | tree | snapshot
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... commit | commitdiff | tree | snapshot
2011-09-27 jproctersame overzeaolous logic (JAL-915) commit | commitdiff | tree | snapshot
2011-09-27 jprocterstart of Release 2.7 commit | commitdiff | tree | snapshot
2011-09-27 jprocterJAL-944 - replaced stale PFAM links for 2.7 release... commit | commitdiff | tree | snapshot
2011-09-27 jprocterbackout overzealous logic disabling feature links in... commit | commitdiff | tree | snapshot
2011-09-27 jprocterNPE fix commit | commitdiff | tree | snapshot
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff | tree | snapshot
2011-09-26 jprocterexclude build artefacts from repository commit | commitdiff | tree | snapshot
2011-09-26 jprocterupdated documentation table of contents, menus and... commit | commitdiff | tree | snapshot
2011-09-26 jprocterdocumentation for news reader (JAL-943) commit | commitdiff | tree | snapshot
2011-09-26 jproctertweak installer with IA2010 - fixes installerObjects... commit | commitdiff | tree | snapshot
2011-09-26 jprocterfix jar dependency in InstallAnywhere commit | commitdiff | tree | snapshot
2011-09-26 jproctertidying classpath and fixing InstallAnywhere build commit | commitdiff | tree | snapshot
2011-09-26 jproctertweaked dialog layout. should consider refactoring commit | commitdiff | tree | snapshot
2011-09-26 jprocteradd new dependencies for 2.7 release commit | commitdiff | tree | snapshot
2011-09-26 jproctermake news window a modal dialog on the jalview desktop... commit | commitdiff | tree | snapshot
2011-09-26 jprocteravoid deprecation and ensure dialog close event is... commit | commitdiff | tree | snapshot
2011-09-25 jprocterorganise imports commit | commitdiff | tree | snapshot
2011-09-25 jproctermore focus fixing (JAL-943) commit | commitdiff | tree | snapshot
2011-09-25 jprocterfix logic to ensure first check for news is correct... commit | commitdiff | tree | snapshot
2011-09-23 jproctertry even harder to get focus - for benefit of windows... commit | commitdiff | tree | snapshot
2011-09-23 jprocterensure blog window gets put to front after dialogs... commit | commitdiff | tree | snapshot
2011-09-23 jprocterdebugged example file again - old version had view... commit | commitdiff | tree | snapshot
2011-09-22 jprocterrefactor and remove excess imports (JAL-943) commit | commitdiff | tree | snapshot
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) commit | commitdiff | tree | snapshot
2011-09-20 jprocterhelp documentation for Jalview 2.7 commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-747 - made warning message friendlier and more... commit | commitdiff | tree | snapshot
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... commit | commitdiff | tree | snapshot
2011-09-16 jprocternumerically ataxic comments. commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-468 typo and label length in dialog commit | commitdiff | tree | snapshot
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... commit | commitdiff | tree | snapshot
2011-09-16 jproctertweak english commit | commitdiff | tree | snapshot
2011-09-15 jprocterdocumentation for new preferences (JAL-234 and web... commit | commitdiff | tree | snapshot
2011-09-15 jprocterdocumentation for JAL-234 commit | commitdiff | tree | snapshot
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