jalview.git
2012-08-21 jprocterJAL-1142 - test to demonstrate mismatch between rnaview...
2012-08-20 jprocterJAL-1140 test Annotate3D methods for SAM Riboswitch...
2012-08-20 jprocterJAL-1140 library methods for accessing the Annotate3d...
2012-08-20 jprocterJAL-1028 utilities package for accessing synchronous...
2012-08-20 jprocterJAL-1140 bugfix - getDataName throws errors - prefer...
2012-08-20 jprocterJAL-1140 use the Reader provided by the jalview.io...
2012-08-17 jprocterMerge branch 'develop' into menard
2012-08-14 jprocterdo not commit .settings to .git
2012-08-14 Anne Menardlast version stay many bugs ..
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service...
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client...
2012-08-05 jprocterJAL-1131 - todos for later versions
2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if...
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio...
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params
2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content...
2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across...
2012-08-03 jprocterJAL-1136 less code-dependent formula for creating serve...
2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container...
2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignm...
2012-08-02 jprocterJAL-976 better logging/error reporting for disorder...
2012-08-02 jprocterJAL-976 JAL-958 todo list for release
2012-08-01 jprocterJAL-976 ensure protein disorder services appears in...
2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws servi...
2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f9411...
2012-07-16 Anne MenardLast version
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-08 jprocterdocumentation for PCA calculation parameters and reset...
2012-07-08 jproctera209409239 (JAL-976 - add support for storing service...
2012-07-08 jprocterJAL-976 clean out associated annotation
2012-07-08 jprocterJAL-976 implement additional calcId method
2012-07-08 jprocterJAL-976 simpler parameter update model
2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for paramet...
2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associate...
2012-07-08 jprocterJAL-976 pick an available instance of a service based...
2012-07-08 jprocterbugfix - use currently held parameters
2012-07-08 jprocterJAL-976 - storing service parameters on the view model
2012-07-06 jprocterJAL-976 test if the sliders have been modified from...
2012-07-06 jprocterunique URI for service type
2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calcul...
2012-07-06 jproctertidy imports
2012-07-06 jprocterJAL-976 - add support for storing service parameter...
2012-07-05 Anne MenardAdd support RNAML format
2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
2012-07-03 jprocterJAL-974 - broken copy of feature settings
2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide...
2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation...
2012-07-02 jproctertidy imports
2012-07-02 jprocterJAL-974 create graduated feature colours for annotation...
2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel
2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to Align...
2012-07-01 jprocterJAL-1117 alleviate lock starvation
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
2012-06-26 jprocterJAL-899 added groovy support to develop branch
2012-06-20 jprocterformatting
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing paramet...
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons paramete...
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped...
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren...
2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is...
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of worker...
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignm...
2012-06-15 jprocterformatting
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace...
2012-06-15 jprocterfix JAL-1122
2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuri...
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel.
2012-06-15 jprocterJAL-1120 patch for desktop
2012-06-15 jprocterpatch for JAL-1121 - reset button and slightly wider...
2012-06-15 jprocterJAL-535 refactoring todo
2012-06-15 jprocterExtended IProgressIndicator with method to check if...
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually...
2012-06-14 jprocterJAL-1115 - synchronized access to group list
2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to...
2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new...
2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignm...
2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is regis...
2012-06-14 jprocterformatting
2012-06-14 jprocterformatting
2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider...
2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just...
2012-06-14 jprocterJAL-1115 trap exception arising from race condition...
2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of...
2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker...
2012-06-14 jprocterJAL-961 potentially helpful println statements when...
2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from...
2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-06-12 jprocterJAL-1115 - use local reference for annotation row
2012-06-12 jprocterJAL-961, JAL-1115 - pending test to ensure only one...
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