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jalview.git
2017-06-28 kiramtJAL-2588 Gap colour scheme now shown in overview commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2588 Consistent gap colour when in None colour... commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2589gapColour' into feature/2588 commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2576 release notes commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2588 Naive implementation of gaps as grey in overview commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 updated docs commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2578' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'features/JAL-2228_featureSetCounts_minRan... commit | commitdiff | tree | snapshot
2017-06-02 tcofoegbuJAL-2473 revised default minimum dimension for Alignmen... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always create zero score annotations, since... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always set minimum for count to zero for annot... commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2576 Proposed fix bug/JAL-2576 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2578 Moved hidden columns reveal to before selectio... bug/JAL-2578 commit | commitdiff | tree | snapshot
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 release notes for JAL-2547, JAL-2563, JAL... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2398 - updated groovy script for direct field modif... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 JAL-2563 release notes commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 typo commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuFixed failing tests commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2388 release notes commit | commitdiff | tree | snapshot
2017-05-29 tcofoegbuJAL-1648 improvement on finder searchbox keyboard contr... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2520 properly documented as a fixed bug in release... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2465,JAL-2520,JAL-2533 release notes commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... commit | commitdiff | tree | snapshot
2017-05-29 tcofoegbuJAL-1648 code fix - enter key should pick selected... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2536 tweak javadoc wording commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2517 release notes commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2517cancelAppletColour' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim Procterrelease notes commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2418 updated JABAWS server in what’s new commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2491 JAL-2526 JAL-2566 JAL-2563 JAL-2547 release... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2547tooltipOnGap' into develop commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... commit | commitdiff | tree | snapshot
2017-05-27 Jim ProcterJAL-2562 javadoc TODO commit | commitdiff | tree | snapshot
2017-05-26 kiramtJAL-2491 Missed port to applet from JAL-1691 bug/JAL-2491 commit | commitdiff | tree | snapshot
2017-05-26 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-26 Jim ProcterJAL-2418 updated JPred documentation and screenshot... commit | commitdiff | tree | snapshot
2017-05-26 Jim ProcterJAL-2418 JAL-2549 JABAWS 2.2 release notes commit | commitdiff | tree | snapshot
2017-05-26 Jim ProcterMerge branch 'features/JAL-2549_updateJABAWSto220'... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuMerge branch 'features/JAL-1648_cache_user_inputs'... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuJAL-1648 fix to transfer focus back to alignment frame... commit | commitdiff | tree | snapshot
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... commit | commitdiff | tree | snapshot
2017-05-25 kiramtJAl-2034 Ported to applet bug/JAL-2034contextchange commit | commitdiff | tree | snapshot
2017-05-25 kiramtJAL-2034 don't update overview after click without... commit | commitdiff | tree | snapshot
2017-05-25 kiramtMerge branch 'bug/JAL-2551' into bug/JAL-2034contextchange commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup commit | commitdiff | tree | snapshot
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 commit | commitdiff | tree | snapshot
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves... commit | commitdiff | tree | snapshot
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