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jalview.git
2016-09-22 gmungocJAL-2216 finalize call super.finalize() commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus docum... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 reworked annotation docs commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1577 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2027 releasenotes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1563 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documen... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq document... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... commit | commitdiff | tree | snapshot
2016-09-19 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1353 small tidy of test commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1270 use test properties file commit | commitdiff | tree | snapshot
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 clear out old what’s new and add ensembl and... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 JAL-1705 JAL-1795 ensembl fetching docs commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 tidied docs for sequence fetcher
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2016-09-16 Jim ProcterJAL-2089 release notes commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 zero day for 2.10 - 20th Sep 2016 commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterMerge branch 'patch/JAL-2164_updatesRESNUMtests' into... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2183 don't open two free text panels; give input... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2183 avoid duplicate closeDialog() commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test... commit | commitdiff | tree | snapshot
2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same... commit | commitdiff | tree | snapshot
2016-09-14 Jim ProcterJAL-2168 simpler help text re -nonews commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled PDB file parser configuratio... commit | commitdiff | tree | snapshot
2016-09-13 Jim ProcterJAL-2119 keeping gmungoc happy by not running linkcheck... commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... commit | commitdiff | tree | snapshot
2016-09-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-13 gmungocJAL-1803 tests added for PDBEntry.Type commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... commit | commitdiff | tree | snapshot
2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseIn... commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuJAL-2195 bug fix to enable restoring jmol session save... commit | commitdiff | tree | snapshot
2016-09-13 gmungocJAL-2119 use File.separator not "/" commit | commitdiff | tree | snapshot
2016-09-12 Jim ProcterMerge branch 'patch/JAL-2068_JAL-2169_multiviewannotwor... commit | commitdiff | tree | snapshot
2016-09-12 gmungocJAL-2119 case-sensitive href filename checking commit | commitdiff | tree | snapshot
2016-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-09 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-09-09 Jim ProcterJAL-2119 links must match case on Linux systems commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2119 pass/resolve real help dir in link checker commit | commitdiff | tree | snapshot
2016-09-08 tcofoegbuJAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property... commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterMerge branch 'feature/JAL-2119_helplinkchecker' into... commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2119 build fails if invalid links are present commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2119 non-zero exit if any invalid links commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2119 count and report total invalid anchor links commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2089 JAL-2119 help link fixups commit | commitdiff | tree | snapshot
2016-09-08 Jim ProcterJAL-2119 linkcheck target. runs before build indices commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterMerge branch 'bug/JAL-1803_JAL-2157' into develop commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-1670 groundhog day: fix FeaturesFileTest by redacti... bug/JAL-1803_JAL-2157 commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterMerge branch 'bug/JAL-1803_JAL-2157' into develop commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-2192 TODO commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and... commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant... commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-1803 transfer mapped chain’s PDBEntry to the *datas... commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-1803 first pass at updatePDBEntry commit | commitdiff | tree | snapshot
2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert commit | commitdiff | tree | snapshot
2016-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-07 gmungocJAL-2164 fix failing test commit | commitdiff | tree | snapshot
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid... commit | commitdiff | tree | snapshot
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... commit | commitdiff | tree | snapshot
2016-09-06 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-1563 UniProt FTS doc revisions commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-2089 update Uniprot to UniProt in help docs. commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-2089 drop MCView documentation from contents. commit | commitdiff | tree | snapshot
2016-09-05 gmungocJAL-2154 made Java 7 compatible commit | commitdiff | tree | snapshot
2016-09-05 gmungocJAL-2106 increased coverage for testGetPrimaryDbRefs commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-1919 revised mmCIF documentation commit | commitdiff | tree | snapshot
2016-09-05 Jim ProcterJAL-2089 bump release date for 2.10 commit | commitdiff | tree | snapshot
2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1919 preserve filename on restore of project so... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1803 JAL-2106 patch tests for tighter PDB Primary... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1803 recover type field faithfully for mmCIF/PDB... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1803 restore property array for a sequence’s associ... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1803 chainCode moved onto property hashtable as... commit | commitdiff | tree | snapshot
2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always... commit | commitdiff | tree | snapshot
2016-09-02 gmungocJAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME commit | commitdiff | tree | snapshot
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop commit | commitdiff | tree | snapshot
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