jalview.git
2017-04-12 gmungocJAL-2403 public static methods to convert distance...
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel...
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
2017-04-11 gmungocJAL-2428 Javadoc
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur...
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher...
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-10 gmungocJAL-2416 test updated for reinstatement of '*' row...
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour...
2017-04-09 gmungocJAL-2393 remove unused commented code
2017-04-07 gmungocJAL-2393 code tidying for review comments
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check...
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of...
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461
2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-03-30 gmungocJAL-2401 code and help tidy for review comments
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
2017-03-29 gmungocJAL-2416 JAL-728 reduced dependency on Blosum62 impleme...
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle...
2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity...
2017-03-28 gmungocJAL-2416 format matrix more readably
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols...
2017-03-28 gmungocJAL-2416 JAL-2403 remove unused '*' row/column from...
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min...
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex...
2017-03-27 gmungocJAL-2416 amended to AAindex format
2017-03-27 gmungocJAL-2416 amended to (as near as possible) strict NCBI...
2017-03-27 gmungocJAL-2416 class Javadoc updates prior to parsing changes
2017-03-27 gmungocJAL-2468 change score model in PCAModel when switching
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score...
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically...
2017-03-27 gmungocJAL-2416 tooltip with descriptions for score models...
2017-03-27 gmungocJAL-2416 add score model description field for tooltip...
2017-03-27 gmungocJAL-2403 SWDistanceModel now SmithWatermanModel - a...
2017-03-27 gmungocJAL-2416 use '-' not space for gap in score matrices
2017-03-27 gmungocJAL-2428 unused method deleted
2017-03-27 gmungocJAL-2403 PIDDistanceModel deleted as superseded by...
2017-03-27 gmungocJAL-2428 pass AlignmentView to TreeModel so Show Input...
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-24 gmungocJAL-2428 use 'correct' name for selected score model
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text...
2017-03-24 gmungocJAL-1632 named parameters
2017-03-24 gmungocJAL-2398 corrected BLOSUM62 C -> R score in resource...
2017-03-24 gmungocJAL-2416 tests added for ScoreMatrix
2017-03-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-24 kiramtJAL-2314 Tidy up
2017-03-24 kiramtJAL-2314 Fixes to DisorderAnnotExportImport test
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca...
2017-03-23 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full...
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 gmungocJAL-2397 scale PCA by PID to alignment width to match...
2017-03-23 gmungocJAL-2397 formatting only
2017-03-23 gmungocJAL-1632 suppress PID parameter options in Tree/PCA...
2017-03-23 gmungocJAL-838 class javadoc added
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 gmungocJAL-2393 code tidy and comments, PIDDistanceModel depre...
2017-03-23 gmungocJAL-2393 updated test for removal of PIDDistanceModel
2017-03-23 kiramtJAL-2314 Tidies
2017-03-23 kiramtJAL-2314 Re-annotated unit tests using Jws2Discoverer
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota...
2017-03-22 kiramtMerge remote-tracking branch bug/JAL-2436featureRendererThreading
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate...
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test
2017-03-21 gmungocJAL-2306 assert no DAS sources
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence...
2017-03-21 gmungocJAL-2243 update discovered features on opening structur...
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into...
2017-03-20 kiramtJAL-2388 Comment typo
2017-03-17 kiramtJAL-2388 ViewportRanges unit test
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests
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