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jalview.git
2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands... commit | commitdiff | tree | snapshot
2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report... commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-367 code tidy commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide commit | commitdiff | tree | snapshot
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f... commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 change redacted commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... commit | commitdiff | tree | snapshot
2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program... commit | commitdiff | tree | snapshot
2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for... testing/JAL-3577_jalviewversion_autoset_fixed commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background... task/JAL-3577_Jalview_Test_installers commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEA... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu... commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 removed debugging commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdow... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterJAL-3407 basic doc for releasing jalview - will be... commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterJAL-3407 updated release date to 2nd April, and first... commit | commitdiff | tree | snapshot
2020-03-31 gmungocJAL-1889 better (?) wait for Conservation thread commit | commitdiff | tree | snapshot
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'... commit | commitdiff | tree | snapshot
2020-03-30 Jim ProcterJAL-3407 2.11.1.0 release date bump - maybe tomorrow... commit | commitdiff | tree | snapshot
2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks... commit | commitdiff | tree | snapshot
2020-03-27 soaresJAL-3225 updated essential files for eclipse project... commit | commitdiff | tree | snapshot
2020-03-26 Ben SoaresJAL-3225 Also look for local.properties in file named... commit | commitdiff | tree | snapshot
2020-03-26 soaresJAL-3225 This one file needed for project if git clean... commit | commitdiff | tree | snapshot
2020-03-26 Ben SoaresJAL-3225 All of .settings now gitignored. org.eclipse... commit | commitdiff | tree | snapshot
2020-03-25 Ben SoaresJAL-3248 Added instructions for downloading and configu... commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3562 exclude testNG groups from a build via -Ptestn... commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3407 JAL-3562 release notes commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3407 rejigging new features - simplify release... commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3407 reformat releases.html commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3407 JAL-3549 javadoc commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3407 - release notes for JAL-3547 commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3549 javadoc commit | commitdiff | tree | snapshot
2020-03-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 increase maxheapsize for test worker process commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir... commit | commitdiff | tree | snapshot
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to... commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 put org.gradle.jvmargs explicitly into gradle... commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 merged cleanClover with develop commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresJAL-3541 rejigged clover tasks very mildly commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresRevert "JAL-3541 trying out previous cloverReport task" commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresJAL-3541 trying out previous cloverReport task commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 JAL-3187 help documentation for virtual featur... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 JAL-3549 explicitly mention the ‘no features... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 group together ‘virtual feature’ related featu... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-03-12 Ben SoaresMerge commit '3fe5792cc63d53a5ace952bd68d3bb673c97f588... improvement/JAL-3394_added_categories_to_unix_shell_installer_desktop_file commit | commitdiff | tree | snapshot
2020-03-12 Ben SoaresJAL-3394 updated version if install4j gradle plugin commit | commitdiff | tree | snapshot
2020-03-12 Ben SoaresMerge branch 'develop' into improvement/JAL-3394_added_... commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3407 3549 in release notes commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no... commit | commitdiff | tree | snapshot
2020-03-09 Ben SoaresJAL-3227 slightly adapted download_jres.sh to make... commit | commitdiff | tree | snapshot
2020-03-09 Ben SoaresJAL-3394 Made Categories line configurable/readable... commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test commit | commitdiff | tree | snapshot
2020-03-06 Ben SoaresJAL-3394 Added Categories=Science;Biology;Java; to... commit | commitdiff | tree | snapshot
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