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jalview.git
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 Unit test for bug commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 bug fix commit | commitdiff | tree | snapshot
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... commit | commitdiff | tree | snapshot
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped... commit | commitdiff | tree | snapshot
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row... commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2295 Spanish translations added commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2361 Spanish text added commit | commitdiff | tree | snapshot
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header... commit | commitdiff | tree | snapshot
2017-04-19 tcofoegbuJAL-2482 added null check commit | commitdiff | tree | snapshot
2017-04-18 tcofoegbuJAL-2482 Bugfix commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-2361 tweak layout of warning message commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux... commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher... commit | commitdiff | tree | snapshot
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour... commit | commitdiff | tree | snapshot
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour... commit | commitdiff | tree | snapshot
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314 commit | commitdiff | tree | snapshot
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 commit | commitdiff | tree | snapshot
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461 commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added commit | commitdiff | tree | snapshot
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 code and help tidy for review comments commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... commit | commitdiff | tree | snapshot
2017-03-24 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-24 kiramtJAL-2314 Tidy up commit | commitdiff | tree | snapshot
2017-03-24 kiramtJAL-2314 Fixes to DisorderAnnotExportImport test commit | commitdiff | tree | snapshot
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour commit | commitdiff | tree | snapshot
2017-03-23 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full... commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues commit | commitdiff | tree | snapshot
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2314 Tidies commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2314 Re-annotated unit tests using Jws2Discoverer commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota... commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch bug/JAL-2436featureRendererThreading commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate... commit | commitdiff | tree | snapshot
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2306 assert no DAS sources commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer commit | commitdiff | tree | snapshot
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... commit | commitdiff | tree | snapshot
2017-03-20 kiramtJAL-2388 Comment typo commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 ViewportRanges unit test commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute... commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterJAL-1933 refactor parameter for code clarity commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Unit test update commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applet update for overview panel commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split... commit | commitdiff | tree | snapshot
2017-03-15 kiramtJAL-2388 Unit tests and tidies commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 corrected getFeatureRenderer() commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2442 applet feature transparency also on overview... commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed' commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat... commit | commitdiff | tree | snapshot
2017-03-15 gmungocMerge branch 'develop' into bug/JAL-2436featureRenderer... commit | commitdiff | tree | snapshot
2017-03-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 Working overview panel commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit tests for FeatureColourFinder (transparen... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 corrected handling of default colour commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff | tree | snapshot
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